Gene VIBHAR_01871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_01871 
Symbol 
ID5553667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp1883794 
End bp1884867 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content47% 
IMG OID640907360 
Producthypothetical protein 
Protein accessionYP_001445065 
Protein GI156974158 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain 
TIGRFAM ID[TIGR02974] psp operon transcriptional activator PspF 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGTAAATT TCACCAACTT AAATACTGTA AATCTTGGCC AGACAGAAAA TAAGAAGGAT 
TTTATGAAGC AGAACCTCAT TGGTGAATCG CCCGCCTTTC TCGCCGTGTT AGATAAAGTA 
TCACAACTTG CGCCGATTGA GCGGCCCGTT CTTATTATTG GGGAACGAGG CACAGGTAAA 
GAGCTCATCG CGCAACGTTT ACACTATTTA TCAAAGCGTT GGGATAAGCC ACTGCTTTCT 
CTAAACTGTG CGACATTAAG CGAGGGTTTG ATTGACTCCG AGCTGTTTGG TCACGAATCG 
GGGTCATTTA CAGGGTCGAA AGGTAAACAT AAAGGCCGCT TTGAACGCGC CGAAGGTGGC 
ACCTTATTCC TTGATGAATT GGCAACCGCG CCACTCCTCG TTCAAGAAAA ACTCCTACGT 
GTGATTGAAT ATGGCGAATA CGAGCGCGTT GGTGGACACA CGGCATTAAC TGCAGACGTT 
CGCTTGGTTT GTGCAACCAA TGCTGATTTA CCAAAACTGG CAGAGCAAGG GGATTTCCGT 
GCGGATTTGC TCGACCGTTT GGCCTTTGAT GTCATCATGC TTCCGCCACT GAGGGAGCGA 
AAAGAAGACA TCCTTTCCCT TGCCGAGCAT TACGCGATCA AGATGTGTCG CGAATTGCAG 
TTGGAATACT TTGTTGGCTT TACGGAAGAG GCACAACAGT CACTGCTCGA TTACGAATGG 
CCGGGCAACG TTCGTGAATT AAAGAATGTG ATTGAACGAG CAATCTATCG TCACGGTCTC 
AATTCAGATC CTATCGAACA CCTTATCTTC AACCCATTTC AAACGGGTTG GGATAACTCA 
CTCGGCCACA CTGCCGCTCA GGAAGAAACC GAGACAACAG AGGCCACTCC GCACTCCGCA 
ATCCACTTCC CTCTGGACTA CAAGCAGTGG CAAGAAGATC AAGATATTGA ATTGCTAAAC 
CGAGCACTAG AAGAAGCGAA GTTTAACCAA CGCCAAGCCG CAGAATTATT GGGGTTAAGC 
TACCACCAGC TTAGAGGTAT GGTCAGAAAA TATGGCTTAG TCGGTCAAGG ATAA
 
Protein sequence
MVNFTNLNTV NLGQTENKKD FMKQNLIGES PAFLAVLDKV SQLAPIERPV LIIGERGTGK 
ELIAQRLHYL SKRWDKPLLS LNCATLSEGL IDSELFGHES GSFTGSKGKH KGRFERAEGG 
TLFLDELATA PLLVQEKLLR VIEYGEYERV GGHTALTADV RLVCATNADL PKLAEQGDFR 
ADLLDRLAFD VIMLPPLRER KEDILSLAEH YAIKMCRELQ LEYFVGFTEE AQQSLLDYEW 
PGNVRELKNV IERAIYRHGL NSDPIEHLIF NPFQTGWDNS LGHTAAQEET ETTEATPHSA 
IHFPLDYKQW QEDQDIELLN RALEEAKFNQ RQAAELLGLS YHQLRGMVRK YGLVGQG