| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01528 |
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| Symbol | |
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| ID | 5554825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 1528207 |
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| End bp | 1531668 |
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| Gene Length | 3462 bp |
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| Protein Length | 1153 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640907019 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001444725 |
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| Protein GI | 156973818 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAAAG CAACAATTCT TTCCGTCACG AATCCATCTG AGCGTGGCGA CAAAAAACAA
CTTGGCAACC TACCTGGTGC AGCATTGGCA ATGGCAATCG CTGAGCTAGC CAAACAGCAT
TCAAGTCACT CTTTGCTTGT AGTGCCAGAT CCACAAATCG CACTCAAGCT ACAAGCAGAA
ATTGAACAGT TTACCGATCA GCCAGTCAGC CTATTTCCAG ATTGGGAAAC ACTGCCTTAC
GACAACTTTT CTCCGCACCA AGAGATCATC TCAGACCGTA TTGCACGCTT ATACCAATTG
CCGACTCAAA GTAATGGCGT AACGATTGTG CCAGTAAGTA CGGTGTTGCA GCGTCAGTCT
CCACGTGATT TCTTATTGCA ACACACTTTG ATGGTGAAAA CGGGCGACCA ATTCTCACTA
GATAAGCTTC GTGTGCAGCT AGAGAACTCA GGCTACCGTC ACGTTGATCA AGTGTTTGGT
CCGGGTGAAT ACGCGAGCCG AGGCTCGATC CTTGACCTGT TCCCAATGGG CAGCTCAGAT
CCATACCGCA TTGATTTCTT CGATGACGAG ATCGACACCA TCCGTACCTT CGATCCAGAA
AACCAACGTT CGATCGAAGA CATTCAGCAA ATCCAATTGC TACCAGCGCA TGAGTTCCCG
ACAACCAAAG CGGCAATTGA AGATTTCCGT ACTCGCTGGC GTTCTCAGTT TGAAGCTCGC
CGCGAGCCCG AGTCGATTTA CATGCAAGTC ACCAAAGGTA CTTGGCCGGC AGGTATCGAG
TACTGGCAAC CACTGTTCTT CGACCATACC GAAACACTGT TTGACTACCT GCCAGAAGAC
TCTCAACTGA TCACATACGG TGATATTGAA GCCTCAGTGG ATACCTTCTT GAATGACGTA
GATTACCGCT ACGATCAAAA GAAAATCGAT CCGATGCGTC CGTTGTTAGC ACCACATGAA
TTGTGGTTGA AAAAAGACGA ACTATTTACT CACTTCAAAC AACTGCCACA GGCGCAGTTG
AACTTAGAGA AAATCGTTAA GCGTGCTGGT CGCCAGAATC TCGCAGTTCA ATCTCTAGCC
GAGCTTGGTG TTCAACAGCA GAACAAAGAG CCGTTAGCGC GTTTACGTCA ATTCAGTGAA
CAATTCACGG GTAAAATCAT TTTCTCTGTG GAATCGGAAG GCCGCCGCGA AGCGCTAACA
GAACTGCTGC AAGGCATTAA AGTTCGCCCT GTCGTGCATG GTTCACTCTA CCAAGCACTG
GATTCTGACG ATCGTTTCAG TTTGATCTTA GGTGCAGCAG AACATGGCTT TATTCACGAG
GACCTGAACT TCGCCCTGAT CTGTGAAAGC GATCTGCTGG GCGATCGTGT GATTCAACGT
CGCCGCAAAG ACAAGAAAGC GGTAAACAGT GACACCGTTA TTCGTCACCT AGCCGAACTT
AAGCCGGGTC AGCCTGTTGT GCACATCGAT CACGGTATTG GCCGCTACAT TGGCCTACAG
ACTCTTGAAG CGGGCGGCAT GAAGACGGAA TACGTAACCC TTGAGTATCA AAATGACGCC
AAGCTTTACG TTCCCGTCTC TTCATTAAAC CTAATCAGCC GCTACTCTGG TGGTGCTGAA
GAGAGCGCGC CGCTGCATAA ACTGGGTGGT GAAGCATGGG CGAAGGCTCG TCGTAAAGCC
GCTGAGAAAG TACGCGACGT CGCGGCAGAG CTACTTGATG TTTACGCTAA GCGTGAATTG
AAACCGGGCT ACAAGTTTGA GCTGGACCGT GGTCAATACG CCACATTTAA AGCCACCTTC
CCGTTTGAAG AAACCGATGA TCAGTCAACT GCCATTAATG CGGTTCTATC CGATATGTGC
CAAGCAAAAG CCATGGACCG CCTCGTATGC GGTGATGTGG GCTTTGGTAA AACAGAAGTG
GCGATGCGCG CTGCGTTTGT TGCCACAGAC AATAGTAAGC AGGTCGCGGT ATTGGTGCCA
ACCACCCTAC TTGCTCAGCA GCACTTTGAA AACTTCCGTG ACCGCTTTGC CAACTTACCA
ATTCGCGTAG AAGTACTTTC ACGTTTTAAA TCGGCAAAAG AGCAAAAAGT CATTCTTCAA
GACGTCGCCG ATGGCAAAGT GGATATTGTC GTAGGTACTC ATAAACTACT TTCAAGTGAC
ATCAAATTCA AAGATCTTGG CTTATTGATT GTCGATGAAG AACACCGCTT CGGTGTACGC
CAAAAAGAAA AAGTGAAAGC GATGCGTGCT GATGTCGACA TCCTAACGCT GACCGCAACC
CCTATTCCTC GTACATTGAA TATGGCAATG AGTGGCATGC GCGACTTGTC GATCATCGCA
ACTCCGCCAG CACGCCGTTT GGCAATCAAA ACATTTGTGC GTCAACGTGA AGACTCCGTG
GTTCGTGAAG CAGCACTGCG TGAAATCATG CGTGGTGGTC AGGTTTACTT CCTGCACAAC
CAAGTCGAAA CCATCGAGAA AACAGCCGAA GATCTGCAAA AGCTCATCCC AGAAGCGCGT
GTGACCGTTG CCCACGGCCA GATGCGTGAG CGCGAGCTAG AACGCATCAT GAATGACTTC
TATCATCAGC GTTTTAACCT TTTGGTGTGT ACCACCATCA TAGAAACAGG TATCGACGTT
CCGACCGCCA ACACCATTAT CATGGATCGA GCTGATAACC TCGGTCTTGC ACAGCTACAC
CAATTACGTG GCCGCGTTGG TCGTTCACAC CATCAAGCTT ACGCTTACTT ACTGACGCCA
CATCCAAAAG CCATCACCAA AGATGCGATT AAGCGTCTTG ATGCGATCGC TTCGCTGGAA
GATCTCGGTG CAGGTTTCAC ACTGGCCACG CACGATCTTG AGATTCGTGG TGCGGGTGAG
CTATTAGGTG ACGAACAAAG TGGTCAAATT CAATCTGTTG GCTTTACACT GTATATGGAG
ATGCTTGAAC AAGCGGTTGA AGCATTGAAA GAAGGTAAAG AGCCACCATT GGATGATCTG
CTTCGCGAAC AAACTGAAAT TGAAATGCGT ATCCCAGCGC TATTGCCGGA TGACTACATT
CCAGATGTGA ACACACGTCT ATCGATGTAC AAACGCATTG CAAGCGTGAC AGATAACGAA
GGTTTGTCTG AACTGAAAGT GGAACTGATT GACCGATTTG GTATTTTACC AGATGCAACC
AAGAACCTCC TATCTGTCTC AGAGTTGAAA ATTGGGGCAG GAAGTCTCAA AGCGAAGAAA
ATTGAGGCGC ATGATAAGGG CGGATTCATT GAGTTTTACC CTGATGCTGA CATTAATCCA
GCGTATTTGG TTAAACTCCT GCAATCACAG CCGCAAAAAT TTGCAATGGA AGGTCCAACT
AAGTTCAAGT TTAGCGTACC ATTGACGGAC CGACGTAAAC GCATCCAGTT TGTTCAAGAC
TTACTGAATG ATTTTAAAAA GAATTTATTA CCAACGAGCT AA
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| Protein sequence | MTKATILSVT NPSERGDKKQ LGNLPGAALA MAIAELAKQH SSHSLLVVPD PQIALKLQAE
IEQFTDQPVS LFPDWETLPY DNFSPHQEII SDRIARLYQL PTQSNGVTIV PVSTVLQRQS
PRDFLLQHTL MVKTGDQFSL DKLRVQLENS GYRHVDQVFG PGEYASRGSI LDLFPMGSSD
PYRIDFFDDE IDTIRTFDPE NQRSIEDIQQ IQLLPAHEFP TTKAAIEDFR TRWRSQFEAR
REPESIYMQV TKGTWPAGIE YWQPLFFDHT ETLFDYLPED SQLITYGDIE ASVDTFLNDV
DYRYDQKKID PMRPLLAPHE LWLKKDELFT HFKQLPQAQL NLEKIVKRAG RQNLAVQSLA
ELGVQQQNKE PLARLRQFSE QFTGKIIFSV ESEGRREALT ELLQGIKVRP VVHGSLYQAL
DSDDRFSLIL GAAEHGFIHE DLNFALICES DLLGDRVIQR RRKDKKAVNS DTVIRHLAEL
KPGQPVVHID HGIGRYIGLQ TLEAGGMKTE YVTLEYQNDA KLYVPVSSLN LISRYSGGAE
ESAPLHKLGG EAWAKARRKA AEKVRDVAAE LLDVYAKREL KPGYKFELDR GQYATFKATF
PFEETDDQST AINAVLSDMC QAKAMDRLVC GDVGFGKTEV AMRAAFVATD NSKQVAVLVP
TTLLAQQHFE NFRDRFANLP IRVEVLSRFK SAKEQKVILQ DVADGKVDIV VGTHKLLSSD
IKFKDLGLLI VDEEHRFGVR QKEKVKAMRA DVDILTLTAT PIPRTLNMAM SGMRDLSIIA
TPPARRLAIK TFVRQREDSV VREAALREIM RGGQVYFLHN QVETIEKTAE DLQKLIPEAR
VTVAHGQMRE RELERIMNDF YHQRFNLLVC TTIIETGIDV PTANTIIMDR ADNLGLAQLH
QLRGRVGRSH HQAYAYLLTP HPKAITKDAI KRLDAIASLE DLGAGFTLAT HDLEIRGAGE
LLGDEQSGQI QSVGFTLYME MLEQAVEALK EGKEPPLDDL LREQTEIEMR IPALLPDDYI
PDVNTRLSMY KRIASVTDNE GLSELKVELI DRFGILPDAT KNLLSVSELK IGAGSLKAKK
IEAHDKGGFI EFYPDADINP AYLVKLLQSQ PQKFAMEGPT KFKFSVPLTD RRKRIQFVQD
LLNDFKKNLL PTS
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