Gene VIBHAR_01166 details

Gene Information

• Locus tag: VIBHAR_01166
• ID: 5553908
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 1185155
• End bp: 1186279
• Gene Length: 1125 bp
• Protein Length: 374 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640906658
• Product: pyrimidine deaminase
• Protein accession: YP_001444383
• Protein GI: 156973476
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCAAC AATCTCTCTC TTCAGAATTT ACCTCTCAAG ATTTCGAAAT GATGTCGCGT 
GCGCTCAAGT TAGCGAAGCG CGGCATTTAT ACAACGGCAC CTAACCCGAA TGTAGGCTGT 
GTTATTGTCC GTGACGGTGA GATAGTTGGC GAAGGTCATC ATCACCGTGC AGGCGAGCCT 
CATGCCGAAG TCCACGCCAT GCGTATGGCG GGGGATAAAA CCCAAGGTGC GACAGCTTAC 
GTAACGTTGG AGCCTTGTTC TCACTATGGC CGCACGCCAC CTTGTGCTGA AGGGCTCATC 
AAAGCCAAAG TCGCGCGCGT TGTCTGTGCG ATGGAAGATC CCAACCCGAA AGTCGCAGGG 
CGCGGTTTTC AAATGCTGCG TGATGCAGGG GTAGAAGTTC AGGTCGGCTT GTTAGAAAGC 
GAAGCTATTG AACTGAACAA AGGCTTCATC AAATTCATGC AAACGGGCAT GCCATACATT 
CAGTTGAAAA TGGCGGCCAG TTTAGACGGA CAAAGCGCAC TCAGTAATGG TCAAAGCCAA 
TGGATCACCT CCCCAAAGGC TCGCCAAGAT GTGCAGCGTT ATCGTGCATT GAGCTGTGGG 
ATTCTCTCAA CCAGCAAAAC CGTGATTGAT GACAATGCGT CATTGAACGT TCGCTGGGAG 
GATTTGCCAA AAAGCGTGCA AACGCAATAT CCCCAAGAGG ATGTCCGTCA GCCTCCGCGC 
GTTATTTTCG ATCGCCAGTC TCAGCTTAGT GATGATCTAA AGCTATTCAA TACTGATGGT 
GAGCGTATCA TTGTCAGCCA AGGTAGCGAT ATGGTCCCTG AACTGGGTGA AAATGGCCAA 
ATTGACTTAG CGGCGACACT AAGAAATGTA GCAAGCGGAT ACCATATCAA TCACTTGTGG 
GTCGAGGCAG GAGCGACGCT CGCGAGTTCG TTAATCAAAG CTAACCTTGT AGATGAACTG 
ATTGTTTATC TTGCACCCAA ATTGATGGGC AGCGATGGAC GAGGCTTGAT TGGTGCACTT 
GGGTTAACTG AGATGGCCCA AGTTATCGAT TTAACTATTA CCGATGTTCG AATGGTGGGT 
GTGGATATTC GTATTACTGC AACCGTCAAA CGCAACCAAA GCTAG 

 

Protein sequence

MAQQSLSSEF TSQDFEMMSR ALKLAKRGIY TTAPNPNVGC VIVRDGEIVG EGHHHRAGEP 
HAEVHAMRMA GDKTQGATAY VTLEPCSHYG RTPPCAEGLI KAKVARVVCA MEDPNPKVAG 
RGFQMLRDAG VEVQVGLLES EAIELNKGFI KFMQTGMPYI QLKMAASLDG QSALSNGQSQ 
WITSPKARQD VQRYRALSCG ILSTSKTVID DNASLNVRWE DLPKSVQTQY PQEDVRQPPR 
VIFDRQSQLS DDLKLFNTDG ERIIVSQGSD MVPELGENGQ IDLAATLRNV ASGYHINHLW 
VEAGATLASS LIKANLVDEL IVYLAPKLMG SDGRGLIGAL GLTEMAQVID LTITDVRMVG 
VDIRITATVK RNQS