| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01119 |
|---|
| Symbol | |
|---|
| ID | 5553194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | + |
|---|
| Start bp | 1133304 |
|---|
| End bp | 1136828 |
|---|
| Gene Length | 3525 bp |
|---|
| Protein Length | 1174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640906611 |
|---|
| Product | type I restriction enzyme, R subunit |
|---|
| Protein accession | YP_001444337 |
|---|
| Protein GI | 156973430 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGATCA AGCGCGACAA CGAAAATGAC CCAGAACATT TGGGCAAAGA AGTCAGCTTA
AAGATCTACG ACAGACAAGA GATAGCAGCA GGACAAAGCC GTTATCAAAT TGTCCAACAA
CCTAAGTTTG AGCGTGGTAG CCCGCTGCGT AATGATCGCC GTGGAGACAT TATGCTGCTG
ATCAACGGCA TGCCAGTGTT CCACATTGAA TTAAAACGCA GCGGCATTCC AGTGAGCCAA
GCGGTGAACC AAATTGAGAA GTACTCCAAG GAGGGGATCT TTAGCGGCTT GTTCTCACTG
GTGCAAGTGT TTGTAGCCAT GCAGCCAGAA GAGTCTAAGT ATTTCACCAA CCCAGGAGCC
GATGGCAAGT TCAACCCTGA TTACCAATTT AATTGGGGCA ATATGAACAA TGATCCAATC
AATCACTGGA AAGAGGTAGC GTCAAAACTG CTTTCGATTC CTATGGCGCA TCAGTTGATT
GGTTTCTACA CCGTAGCGGA TAATACCGAT GGGGTGCTCA AGGTGATGCG TAGTTATCAA
TACTACGCCG CTAATGCTAT CTCTGATAAG GTCGCGAAAA CTAAATGGCG ACAGATTAAC
TCGAATGCTG ATCGGCTTGG TGGTTATGTT TGGCATACTA CGGGCTCGGG CAAAACCATG
ACTAGTTTTA AGTCGGCTCA GTTAATTGCT CAATCTCGCG ACGCCGACAA AGTGGTGTTC
TTGATGGATC GCATCGAGCT TGGTTCGCAG TCACTCAAAG AATACCGCAA CTTTGCCGAT
GATAGAGAAG AGGTGCAAGC CACCGAAAAC ACCGATGTGT TGGTCACTAA GCTAAAAAGC
TCAGACCCGA AAGAGACATT GATCGTTAGC TCAATTCAAA AAATGAGCAA TATCTTTGAA
GCGGTTGACG ACCAAGGCAC TGCCACCAAC TCAGCGGATA TTGATCTCAT TCGTGAAAAG
CGCATGGTGT TTATTATAGA TGAAGCACAC CGCTCAACCT TTGGTGACAT GCTAACCATC
ATCAAAAAAA CCTTCCCTAA GGCGCTGTTT TTTGGCTTCA CCGGTACACC TATTCAAGGT
GAAAATGAGA TAAAGGGCAC TACCACCCCC GATATTTTTG GCGATGAGTT GCACCGTTAT
AGCCTTGCCG ACGGTATCCG CGATAAAAAT GTGTTGGGTT TTGACCCATA CAAAATACGC
ACCTTCAAAG AGAGGGAACT AAGGCAAGCG GTCGCTTTAC AGCAGGCAAA AGCTCAAACC
GTCTCTGAGG CAATGGCAGA CCCCAAAAAG AAGAAAAAAT TTAACCACTT TATGAACGAT
GTGCCGTTGG CAGGGATAGC GTTGCCTGAT GATCGTTATG AAAAAGGCAT TGAAGACTAC
GTGCCAAAAA CTCAATATGA AACGGATACG CATCAAGAAC AAGTCGTTGC AGATATCATT
GAGCAGTGGG AAATATTAAG CCAAGCTAAT AAATTTCATG CCATTTTGGC AACCAGCAGT
ATTGCGGAAG CAATCGATTA CTATCGTCGA TTTAAAGCCG CCAAACCTGA GCTCAAAGTG
TCGGCGCTGT TTGACCCTAA CATCAACAAT GAAGGGGAAA ATAGTGTAGA TGGCTGCGCA
GAACGTGGTC CAACCTTTAA GGCGGACGGC CTTGAAGAGA TCATGGCGGA TTACAACGCG
ATGTTTGGTC AAGACTTCGA CTTCGGCCGT CACCCGAAGT TCAAGCAAGA TATGGCAGCG
CGGATGTCGC ACAAAAAGCC GTATGAAGGC ATCCATAAAG AGCCAGAGAA ACAGCTTGAT
TTGATGATAG TGGTTGACCA GATGTTGACG GGGTTTGACT CTAAATGGGT GAATACGCTC
TATTTAGACA AGGTGATCAA ATACCAGAAC GTTATCCAAG CTTTCTCACG CACCAACCGT
TTGTTTGGCC CAGACAAGCC GCATGGAACA ATTCGTTATT ATCGCTACCC AGACACGATG
GAGCGCCATA TTGACGAGGC AGTGAAGCTC TATTCTGGAG ATAAGCCTTT AGGCCTGTTC
GCGGATAAGT TAGAAAGCAA CATAGAGGCG ATGAATGAAA TCTTTGCTGA AATCCAAACC
GTGTTTAACA ATGCCGGTGT GCAAGATTTT GAGTGTCTGC CAGAAGATGA TGAAGCCTGT
GCGAAATTTG CAGCACTGTA CCGTGATTTC AACAAGCACC TTGAAGCAGC GAAAATTCAA
GGTCTAGATT GGACAGATGA TTCACTAGAG TGTGGTGAGC AAGTGTATCT TGGTTTGGCA
CTGCGATACC GAGAACTGGC AAGCCAAAGC GAGCGCGACC CTAGCGGCTC ACAATCAGAT
ATTCCATTCG ATATCGTGGG CTATTTGACT GAGATTGATA CGGGGCGAAT CGATTCGGAC
TACATGAATA GCCGATTCGA GCGTTATTTA CGAGTTTTGA GCAGTGGTGT TAGCGCAGAG
GAGACAGAGC GGACGCTTAA TGAGCTGCAT CAGTCATTCT CATCCCTCAC ACAAGAAGAG
CAGCGATATG CTAGGTTGTT TTTAAATGAC TTGCAGCGTG GTGACGCTCG CCTTAGTGAA
GGCAATAGCT TTAGAGATTA CATTAATCGC TATCAAAACC AAGCAGAGCG AGCCCGCATC
GATGGTATTG TGAATGCGCT AGGGTTAGAC AAAGACTTAT TGTTGCAACT CACCAATGGG
GTAATCAACG AAGAAAATCT TAATCGTTTT GGGCGTTTTG ATACTCTTAA ATCCACTGTA
AACAGAGATA AAGCGAAAGC GTTCTTTGAG CAGTTGGAAG GAAGAACGAT TCCACCATTT
AAAATGAATA TGCTCATCGA TAAGCACCTA AGAGCGTTTA TCTTTGAACA GTCGGAAGTG
TTTAATGTGG ATGAGCCAGT TAACGATGAT GTTCAACAGT CATTGAAGCC AGAACCTTTA
ATGATTGGTG ATGTGAAGCT TTATCGCGCT GACCAGCTGC GATCTCTACC AGGGGCACTT
GAATTAGGTT CAATTACGTT TAAAACTGAT GCGCCATATC TAGATAACCC AGCTTCGCTA
TTAGCAATGA GCTGCTATGG TGAGTTAAAA GCGCTAGGAG TTGTTTCTTC TGACGTTTTG
GATATCACCG TGACTGCACT TCTAGAACTT GAGCAGGTTA CTAAGGAGCT AGACCTTCCT
ATTTATAAAG AAGGTCAGAG TGGTATCGTG TGGGCGCTTA AAGAGGTCAA AGAAGGTAGT
GTTTACACCG AATTTATTGC TTACTTAGTA GAGCTTGTTG GCGATGAGGC ATATAAGCCA
GTTATTGAAA CCATCGTTAT AGCTAGTGGT TACGACTTAA GTAAACGAAC TTTAAGTGCC
GCATTTATTG CTCTCCCTTC ATTATTAATT GCCAAACAAA AAGAGAAGTT AAATCACCCC
AAACAAGAAA ATACTGGAAA AGAGAGCACT GATAGAGCCC CCAATGTAGT TGACTTTAAA
ACTAACGAAA AACTTGCTGC TAAGTGGAAA GAGAAGCAAC ATTAA
|
|---|
| Protein sequence | MAIKRDNEND PEHLGKEVSL KIYDRQEIAA GQSRYQIVQQ PKFERGSPLR NDRRGDIMLL
INGMPVFHIE LKRSGIPVSQ AVNQIEKYSK EGIFSGLFSL VQVFVAMQPE ESKYFTNPGA
DGKFNPDYQF NWGNMNNDPI NHWKEVASKL LSIPMAHQLI GFYTVADNTD GVLKVMRSYQ
YYAANAISDK VAKTKWRQIN SNADRLGGYV WHTTGSGKTM TSFKSAQLIA QSRDADKVVF
LMDRIELGSQ SLKEYRNFAD DREEVQATEN TDVLVTKLKS SDPKETLIVS SIQKMSNIFE
AVDDQGTATN SADIDLIREK RMVFIIDEAH RSTFGDMLTI IKKTFPKALF FGFTGTPIQG
ENEIKGTTTP DIFGDELHRY SLADGIRDKN VLGFDPYKIR TFKERELRQA VALQQAKAQT
VSEAMADPKK KKKFNHFMND VPLAGIALPD DRYEKGIEDY VPKTQYETDT HQEQVVADII
EQWEILSQAN KFHAILATSS IAEAIDYYRR FKAAKPELKV SALFDPNINN EGENSVDGCA
ERGPTFKADG LEEIMADYNA MFGQDFDFGR HPKFKQDMAA RMSHKKPYEG IHKEPEKQLD
LMIVVDQMLT GFDSKWVNTL YLDKVIKYQN VIQAFSRTNR LFGPDKPHGT IRYYRYPDTM
ERHIDEAVKL YSGDKPLGLF ADKLESNIEA MNEIFAEIQT VFNNAGVQDF ECLPEDDEAC
AKFAALYRDF NKHLEAAKIQ GLDWTDDSLE CGEQVYLGLA LRYRELASQS ERDPSGSQSD
IPFDIVGYLT EIDTGRIDSD YMNSRFERYL RVLSSGVSAE ETERTLNELH QSFSSLTQEE
QRYARLFLND LQRGDARLSE GNSFRDYINR YQNQAERARI DGIVNALGLD KDLLLQLTNG
VINEENLNRF GRFDTLKSTV NRDKAKAFFE QLEGRTIPPF KMNMLIDKHL RAFIFEQSEV
FNVDEPVNDD VQQSLKPEPL MIGDVKLYRA DQLRSLPGAL ELGSITFKTD APYLDNPASL
LAMSCYGELK ALGVVSSDVL DITVTALLEL EQVTKELDLP IYKEGQSGIV WALKEVKEGS
VYTEFIAYLV ELVGDEAYKP VIETIVIASG YDLSKRTLSA AFIALPSLLI AKQKEKLNHP
KQENTGKEST DRAPNVVDFK TNEKLAAKWK EKQH
|
|---|
| |