| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00952 |
|---|
| Symbol | |
|---|
| ID | 5555649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 957108 |
|---|
| End bp | 958331 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640906446 |
|---|
| Product | ATP-dependent RNA helicase SrmB |
|---|
| Protein accession | YP_001444178 |
|---|
| Protein GI | 156973271 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCAGAA CCTTTGCTGA ACTTGATCTA GACCAAAACC TACTTGAAGC CATTGATGAG
ATGGGCTACG AACGCCCAAC TAAAATTCAG GCAGAAGCGA TTCCACAAGC GTTGGATGGT
CGTGACATTC TAGCGTCAGC ACCAACTGGT ACAGGTAAAA CGGCAGCGTT CGTCCTGCCA
GCACTGCAAT ACCTGCAAGA TTTTCCACGT CGTAAACCGG GACCTGCACG TATTCTGATC
CTAACCCCAA CTCGTGAACT TGCGATGCAG GTAGCGGATC AAGCGCGTGC ACTAGCGAAA
AACACCAAGC TAAACATCTT CACCATCACA GGTGGTGTTC AATACCAAGA ACACGCAGAC
ATCCTAGCAA CCACACAAGA CATCGTAGTA GCAACACCAG GCCGTCTACG TGAATACATC
GACGCAGAAC GTTTTGACTG TCGTGCGATT GAATGGCTAA TCCTTGATGA AGCAGACCGC
ATGCTAGACA TGGGCTTTGC GCCAACGGTT GACCGTCTGT CTAACGAATG TCGCTGGCGT
AAACAAACCC TTCTGTTCTC AGCAACACTA GAAGGTAAAG GCGTAGAAGG TTTCACAGCA
GACCTACTAA ACGAACCAGC AGAGATCGAC GCGAAGTCCC CACTGCGTGA GCGTAAGAAG
ATTGCACAGT GGTACCACCG TGCTGATGAC GCTGAGCATA AACTTGCCCT ACTAAAACAC
ATCATTACAG AGCAAGCAGA ACGCACTATC GTGTTCTTGA AGACTCGTGA GCGTTTAGCA
GAGCTCCGTG CACAACTAGA GAGCGCACAG ATTCCATGTT CTTGGATTCA AGGTGAAATG
CCTCAAGATC GTCGTAACAA CGCAATCTCT CGCTTCCGTG AAGGCACAGT TAACGTGCTA
CTAGCGACAG ACGTAGCGGC GCGTGGTATC GACCTTCCAG ACGTATCACA CGTAATCAAC
TATGATATGC CACGCACGGC TGACGTATAC CTTCACCGTA TCGGCCGTAC GGCTCGTGCA
GGTAAGAAAG GTAACGCTAT CTCAATCGTA GAAGCACACG ACCAACCAAT GATGGATCGC
GTTGCTCGCT ACGTAAAAGA AGACATCAAA GAGCGTTTCG TGAAAGAGAT GCGCCCTAAA
CACAAAAAAC CTGTGTTCAA GAAGAAAAAG AAAAAAGACG ACAAGAAGAA AGTAGCGAAA
AAGAAAACCG CTAAGAAGAA GTAA
|
|---|
| Protein sequence | MIRTFAELDL DQNLLEAIDE MGYERPTKIQ AEAIPQALDG RDILASAPTG TGKTAAFVLP
ALQYLQDFPR RKPGPARILI LTPTRELAMQ VADQARALAK NTKLNIFTIT GGVQYQEHAD
ILATTQDIVV ATPGRLREYI DAERFDCRAI EWLILDEADR MLDMGFAPTV DRLSNECRWR
KQTLLFSATL EGKGVEGFTA DLLNEPAEID AKSPLRERKK IAQWYHRADD AEHKLALLKH
IITEQAERTI VFLKTRERLA ELRAQLESAQ IPCSWIQGEM PQDRRNNAIS RFREGTVNVL
LATDVAARGI DLPDVSHVIN YDMPRTADVY LHRIGRTARA GKKGNAISIV EAHDQPMMDR
VARYVKEDIK ERFVKEMRPK HKKPVFKKKK KKDDKKKVAK KKTAKKK
|
|---|
| |