Gene VIBHAR_00277 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00277 
Symbol 
ID5553944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand- 
Start bp269331 
End bp270188 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content48% 
IMG OID640905772 
ProductRNA polymerase factor sigma-32 
Protein accessionYP_001443532 
Protein GI156972625 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAAAG AAGCGTATCC GATGGCTCTA GTCACGCAAG ATAGCCTTGA TAGCTACATC 
CGTTCTGTAA ACAGCTACCC AATGCTGACA CCAGAAGAAG AGCGTGGGCT GGCAGAACGA 
TTACACTACA AAGGTGAGAT AGATGCGGCG AAAGGTCTGA TCTTGTCACA CCTACGATTC 
GTTGTTCACG TTGCTCGTGG CTACTCAGGC TACGGCTTGC CAATGGCAGA CCTAGTACAA 
GAGGGCAACA TCGGTCTAAT GAAAGCGGTT AAGCGTTTCA ACCCTGAAGT GGGTGTACGT 
TTGGTGTCTT TCGCTGTTCA CTGGATCAAA GCTGAGATCC ATGAATACGT ACTGCGTAAC 
TGGCGCATCG TTAAGATTGC GACCACCAAA GCGCAACGTA AGTTGTTCTT CAACCTACGT 
AAGTCGAAGA AGCGTCTGGG CTGGTTCAAC AACGGTGAAG TAGAAACCGT TGCTCGTGAG 
TTAGGTGTTG AGCCTTCAGA AGTACGTGAG ATGGAATCAC GTTTAGCGGC AGTGGACTCT 
ACGTTCGATA TGCCAATGGA CGATGACGAC AATTCAAACT CGTACACCGC CCCAATGTTT 
TACCTAGAAG ACAAATCGTC TGATGTAGCG GATAACATTG AAGCGGCAAA CTGGGAAACG 
CACACCAATA ACCGTCTTGG CCATGCGCTA GCAAGTTTAG ATGAGCGCAG CCAGCGTATT 
GTTCGCTCTC GTTGGTTAGA CGACGACAAA GCGACACTGC AAGACTTAGC TGATGAGTTT 
GGTGTTTCTG CTGAGCGTAT TCGTCAACTA GAAAAGAATG CGATGAAGAA ACTGAAACTT 
GCTGTTGGTG AGTTCTAA
 
Protein sequence
MTKEAYPMAL VTQDSLDSYI RSVNSYPMLT PEEERGLAER LHYKGEIDAA KGLILSHLRF 
VVHVARGYSG YGLPMADLVQ EGNIGLMKAV KRFNPEVGVR LVSFAVHWIK AEIHEYVLRN 
WRIVKIATTK AQRKLFFNLR KSKKRLGWFN NGEVETVARE LGVEPSEVRE MESRLAAVDS 
TFDMPMDDDD NSNSYTAPMF YLEDKSSDVA DNIEAANWET HTNNRLGHAL ASLDERSQRI 
VRSRWLDDDK ATLQDLADEF GVSAERIRQL EKNAMKKLKL AVGEF