| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004515 |
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| Symbol | |
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| ID | 8558283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 3238816 |
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| End bp | 3239880 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646407644 |
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| Product | outer membrane stress sensor protease DegS |
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| Protein accession | YP_003287138 |
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| Protein GI | 262395284 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.497623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAGCT TTTTATTACG TTCTGTCTTT TTAGGCTTGG CTACTGCCGC AGTGGTATTA
CTGGCGGTGC CATCTTTGCG CCACAACGTA ATTCCTGCCG CGCTAGATCC GCAACCTGTT
AATATCGCAT CCGTTGAGTT GACATTTAAT CAGGCGGTGC GAAGAGCAGC ACCTGCCGTA
GTAAACATCT ACAGCCGTAA ATATCTTGAA AATGATCGCA GTAAACTCTC GACTCAAGGT
CTGGGTTCTG GTGTCATTGT CAGTGAGAAA GGCTACATCA TTACCAACTA CCACGTGGTT
GCTCAAGCAG ACCAAATTGT TGTCGCATTA CAAGACGGTA GAGCCGCGGC AGCTCAGCTA
GTTGGCACGG ATAAACGCAC AGACATTGCC GTACTGCGTG TCGAAGGTTC AAATTTACCT
GTTATTCCTC TGAACTCGAA TTACAAGCCA CAAGTGGGTG ATGTGGTCCT AGCCATCGGT
AACCCATACA ACCTTGGACA AACCACAACG TTCGGCATTA TTTCAGCAAC AGGACGCTCA
TCGATTAGCG ACGGTCGCCA AGCATTCATT CAAACCGATG CCGCCATCAA TGAGGGCAAC
TCTGGCGGTG CTCTAGTGAA CACACAAGGT GAGCTCGTCG GCATCAATAC CGCCTCTTTC
CAACAAGCGA CTGATTTAGA AACTTACGGT ATTTCCTTTG CGATCCCTGC GCCACTAGCC
AGCAAGATCA TGCAGAAAAT CATCGCTGAT GGTCGCGTGA TTCGTGGCTA TATTGGTATC
GACGGCCAAG ACATTAATGC GGTCACTGCT CGCCTACTTG GAAATGAACA CATAGGTGGT
ATTGTCGTGC TTGGTATTGA TCCAAATGGT CCAGCCAATG CGGCAGGCTT CCAAAAGCAG
GACATCATTA TCAGTATTGA TGGCAATAAA GTGCAAGGGC GTCAGAGCGT CATGGATATC
GTCACCGATT TACGTCCTGG CACCACCGTG GACGTCGGCA TCATTCGCAA AGGAAAAGAG
ATGAGCTTGA AAGTCACCAT TGCCGAAGAC AAGCAAGAAG CATAA
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| Protein sequence | MLSFLLRSVF LGLATAAVVL LAVPSLRHNV IPAALDPQPV NIASVELTFN QAVRRAAPAV
VNIYSRKYLE NDRSKLSTQG LGSGVIVSEK GYIITNYHVV AQADQIVVAL QDGRAAAAQL
VGTDKRTDIA VLRVEGSNLP VIPLNSNYKP QVGDVVLAIG NPYNLGQTTT FGIISATGRS
SISDGRQAFI QTDAAINEGN SGGALVNTQG ELVGINTASF QQATDLETYG ISFAIPAPLA
SKIMQKIIAD GRVIRGYIGI DGQDINAVTA RLLGNEHIGG IVVLGIDPNG PANAAGFQKQ
DIIISIDGNK VQGRQSVMDI VTDLRPGTTV DVGIIRKGKE MSLKVTIAED KQEA
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