| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004218 |
|---|
| Symbol | |
|---|
| ID | 8557979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 2896598 |
|---|
| End bp | 2897137 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646407340 |
|---|
| Product | LPS-assembly lipoprotein RlpB precursor |
|---|
| Protein accession | YP_003286841 |
|---|
| Protein GI | 262394987 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2980] Rare lipoprotein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00101724 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTTT TCTCTTTGAT TAAACTACCA GTGGTATTGG TATTAGCGGG GCTTCTTTCT
GCCTGTGGTT TTCACCTTCG CGGCGAGTAT TCCGTACCGG AAGAGCTGCA CACTATGTCT
TTCTCCAGCT ACGATGAATA CAGTGAATTA ACTCGCTATG TTCGCTCTCA ACTCGAACTG
AACAAAGTTG AACTTGTTCA ACCATCATCG ACTGTACCCA ACCTTCATTT GACGGAAGCG
ACTATCGATG AGCGTACACT GTCTCTGTAT CAAAATAGCC GTGCAGCAGA AAAAGAGCTG
ACATACGTAG TAAAATACCG TGTGACGATT CCTGGCTATG GCTCTAAAAA CTTTACGACA
ACAGTAAACC GCAACTACCT AGACAACCCG TTGACGGCAC TTGCAAAATC TGTTGAACGT
GACGTAATTG AAGACGAGAT GCGCTTGCAA GCTGCAAAAC AGATGATGCG CCAGTTGGGC
CGTATTCGTG CCGAATATGA AGCAGGACAA ATCTCTGAGC CAGCGAACAC AAACTCTTAA
|
|---|
| Protein sequence | MRFFSLIKLP VVLVLAGLLS ACGFHLRGEY SVPEELHTMS FSSYDEYSEL TRYVRSQLEL
NKVELVQPSS TVPNLHLTEA TIDERTLSLY QNSRAAEKEL TYVVKYRVTI PGYGSKNFTT
TVNRNYLDNP LTALAKSVER DVIEDEMRLQ AAKQMMRQLG RIRAEYEAGQ ISEPANTNS
|
|---|
| |