| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003781 |
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| Symbol | |
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| ID | 8557516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2408572 |
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| End bp | 2409273 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646406878 |
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| Product | ribosomal small subunit pseudouridine synthase A |
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| Protein accession | YP_003286406 |
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| Protein GI | 262394552 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000946261 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTTTAG ATAAATATTT GTGTGACGCT CTGGGTGCAA CGCGCAAACA GGCAACAAAG
ATCATCAAAA GTGGTGACAT CACCGTTGAC GGTGAGGTTC AAAAAAGTGG TGCATTTAAA
GTACCTGAAG GTGTGGAAGT AATGTGGGAA GACCGTGTTA TTGGTGCTCC TGGCCCTCGT
TACATTATGT TGTACAAGCC TGCTGACTTT GTTTGTTCAC ATGAAGATGG CTACAACCAA
ACTGCATTCG CATTGCTCGA TGAGCCTAAA ATTGAAAACC TTCACTTTGC GGGCCGATTA
GACGTCGACA CAACCGGTTT GGTGTTGATT ACGGATGATG GTAAGTGGTC TCACCGCATT
ACCTCACCGA AGCATAAGTG TGAGAAAACG TACCGTGTTT GGCTTGTCGA TGCGATTCAG
CCTGATTACG CGGAAAAGCT CGAACAAGGC ATCATTTTGC GCAATGAATC AGAAGCAACA
TTGCCTGCTC GTTTGGAGAT CGTGAACGAG GCAGAGAATG AAGTATTGTT AACTATTGTG
GAAGGTAAGT ATCACCAAGT GAAACGCATG TTTGCGGCGT TAGGAAATAA AGTTGAGTAC
TTACATCGTG AGCGTATTGG TTCGATTGAA CTCGATGAGG CACTAGAACC TGGTGATTAT
CGCTACCTCA CGCAGGAAGA AATTGATTCT ATTTGGAATT AA
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| Protein sequence | MRLDKYLCDA LGATRKQATK IIKSGDITVD GEVQKSGAFK VPEGVEVMWE DRVIGAPGPR
YIMLYKPADF VCSHEDGYNQ TAFALLDEPK IENLHFAGRL DVDTTGLVLI TDDGKWSHRI
TSPKHKCEKT YRVWLVDAIQ PDYAEKLEQG IILRNESEAT LPARLEIVNE AENEVLLTIV
EGKYHQVKRM FAALGNKVEY LHRERIGSIE LDEALEPGDY RYLTQEEIDS IWN
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