| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003523 |
|---|
| Symbol | |
|---|
| ID | 8557256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2108747 |
|---|
| End bp | 2109358 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646406618 |
|---|
| Product | lumazine protein |
|---|
| Protein accession | YP_003286148 |
|---|
| Protein GI | 262394294 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0307] Riboflavin synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.942929 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACAG GAATAGTTCA GGGTACGGCG AAGGTCGTTA AAATTGATAA AAAAGAACGC
TTTCAAACGC ATGTTGTAGA GTTAAGCGAA GAGCTTTGTA AAGGATTAGA AATAGGGGCA
TCTGTCGCTC ACAATGGCTG CTGCCTGACC GTGACCAAAA TTAATGGCAA CCTTATCAGC
TTTGATTTAA TGCAAGCGAC ATTGGCTCTC ACCAACTTAG GCGAGCTAGT TGAAGGTGAC
AGCGTAAACA TTGAGCGAGC TGCCAAGTTT GGTGATGAAA TTGGCGGACA CAGCATGTCT
GGCCATATTA GTTTGATGGC TGATATTGTC GAGATCATCG ATACGCCTAA TAACCGCACG
ATTTGGTTCC AACTGCCGCA AGAATCAATG AAATATGTAT TAGCGAAAGG TTATATCGGC
TTGGATGGTT GTTCTTTGAC GATTGGTGAG GTTGAAGCGT GTCGTTTTTC AGTACACCTA
ATTCCAGAAA CCTTGCAACG AACACTCTTT GGAATAAGAC AAGTAGGGGA CCGCGTTAAT
ATTGAGTTTG ACCCTCAGAC TCAAGCCATA GTTGATACTG TTGAGCGAGT TCTCACAGCA
AAACAGCTTT AG
|
|---|
| Protein sequence | MFTGIVQGTA KVVKIDKKER FQTHVVELSE ELCKGLEIGA SVAHNGCCLT VTKINGNLIS
FDLMQATLAL TNLGELVEGD SVNIERAAKF GDEIGGHSMS GHISLMADIV EIIDTPNNRT
IWFQLPQESM KYVLAKGYIG LDGCSLTIGE VEACRFSVHL IPETLQRTLF GIRQVGDRVN
IEFDPQTQAI VDTVERVLTA KQL
|
|---|
| |