| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003093 |
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| Symbol | |
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| ID | 8556822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1656682 |
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| End bp | 1657620 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646406184 |
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| Product | ribosomal large subunit pseudouridine synthase B |
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| Protein accession | YP_003285718 |
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| Protein GI | 262393864 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00130129 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAA AGTTACAAAA AGTATTAGCA CGTGCTGGTC ACGGTTCTCG TCGTGAGATT
GAATCGTTAA TTAAATCTGG TCGCGTTAGC GTGAACGGTG TAGTCGCTAA GCTTGGTGAA
AGACTTGAAG ACGAGAGCAG CGTAGTTCGT ATCGATGGTC ACATTGTCTC TGCAAAGATT
CAAGAAGAAG TGATTTGTCG TGTACTTGCG TACTACAAAC CCGAGGGTGA ACTGTGTACT
CGTCACGATC CAGAAGGTCG TCGTACTGTT TTTGATCGTC TGCCAAAAAT TCGTGGCTCT
CGTTGGATTT CAGTTGGTCG TCTGGATGCG AACACTTCTG GTCTTCTGCT TTTCACAACG
GATGGTGAAC TGGCGAACCG CTTAATGCAC CCAAGCCGCC AAGTTGAACG TGAATACCTA
GTACGTGTGT TCGGTGAAGT AACTGAACAG AAAGTTCGTA ATCTAGTAAA AGGTGTTGAA
CTGGAAGACG GTTTAGCTCG CTTCGAAGAT GTTGTTTACG CGGGTGGTGA AGGCATGAAC
CACACGTTTT ACGTTGTTAT CAACGAAGGT CGTAACCGCG AAGTTCGTCG ACTATGGGAA
TCGCAAGAGT GTACCGTTAG TCGTCTGAAA CGTGTTCGTT ACGGCGACAT TTTCTTAGAC
AAGAAACTGC CTCGTGGCGG TTGGATGGAG CTTGACCTGA AAGAAGTAAA CTACTTGCGT
GAGCTTGTAG AGCTTCGTCC AGAGAAAGAA ACCATGCTTG ATCTGAACAA AGACAACACG
TCACGCAAAC GTGAGCGTGC ACGCAGCCAA AAAATTCGTC GCGCAGTTAA GCGCCATGAA
GAGCGTGTTA ACACGCCAAA AGGTCGCAGT AACAACCCTT CTCGTCGTAA GCCAAAGAAG
ACTGCTGGTG ACCAAGGCGC ACGTAGCAAG CATCGTTAA
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| Protein sequence | MSEKLQKVLA RAGHGSRREI ESLIKSGRVS VNGVVAKLGE RLEDESSVVR IDGHIVSAKI
QEEVICRVLA YYKPEGELCT RHDPEGRRTV FDRLPKIRGS RWISVGRLDA NTSGLLLFTT
DGELANRLMH PSRQVEREYL VRVFGEVTEQ KVRNLVKGVE LEDGLARFED VVYAGGEGMN
HTFYVVINEG RNREVRRLWE SQECTVSRLK RVRYGDIFLD KKLPRGGWME LDLKEVNYLR
ELVELRPEKE TMLDLNKDNT SRKRERARSQ KIRRAVKRHE ERVNTPKGRS NNPSRRKPKK
TAGDQGARSK HR
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