Gene VEA_002962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002962 
Symbol 
ID8556692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand+ 
Start bp1502448 
End bp1503419 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content47% 
IMG OID646406055 
Productoligopeptide transport ATP-binding protein OppD 
Protein accessionYP_003285589 
Protein GI262393735 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCTTAT TAGATGTCAA AGATCTGCGC GTCGAATTCA CCACGCAAGA TGGTATCGTA 
ACCGCAGTAA ACGATTTGAA CTTCTCTCTC AACCAAGGCG AAACCTTAGG CATCGTTGGA 
GAGTCGGGAT CAGGTAAATC TCAAACCGTA TTCGCAATCA TGGGCCTTTT GGCTAAAAAC 
GGTATTATCT CTGGTAGCGC AAAGTTTGAA GGCAAAGAAA TCTTAAACTT ACCAGAAAAA 
GAACTGAACA AAGTTCGCGC TGAACAGATC GCAATGATCT TCCAAGACCC AATGACATCG 
CTGAACCCTT ACATGAAGGT AAGTGACCAG TTGATGGAAG TGCTTATGCT GCATAAAGGT 
ATGGGCAAAG CGGAAGCATT TGAAGAATCA GTACGCATGC TGGAAGCTGT GAAAATCCCT 
GAAGCGCGTA AGCGTATCAC GATGTACCCG CATGAGTTTT CAGGCGGTAT GCGTCAGCGT 
GTAATGATCG CGATGGCGTT GTTATGTCGC CCTAAACTGC TTATTGCCGA TGAGCCAACA 
ACTGCACTTG ATGTGACGGT TCAAGCACAG ATCATGGACC TGCTTAATGA GCTTAAAGAC 
GAGTTCAACA CGGCGATCAT CATGATCACG CACGACCTTG GTGTTGTTGC AGGTTCGTGT 
GATAAGGTGC TGGTGATGTA TGCAGGTCGT ACGATGGAGT ACGGTAACGT AAACGAGATC 
TTCTATAATC CAAGCCACCC TTATGCAGAG GGTCTACTGA AGGCGATTCC TCGCCTTGAT 
ACGGAAGGTG AAATTCTGCC AACCATTCCT GGTAATCCAC CAAACTTGCT TCGTCTACCA 
CCGGGCTGCC CTTATCAAGA GCGTTGTCAC CGAGTGATGG ATCGTTGTAA GCGTGAAGCG 
CCAATTCTGA CTCCATTTGG TGATGGCCGT CAGCGCGCAT GTTTTTCTGA ATGGGAGGCT 
TGGAACAAAT GA
 
Protein sequence
MSLLDVKDLR VEFTTQDGIV TAVNDLNFSL NQGETLGIVG ESGSGKSQTV FAIMGLLAKN 
GIISGSAKFE GKEILNLPEK ELNKVRAEQI AMIFQDPMTS LNPYMKVSDQ LMEVLMLHKG 
MGKAEAFEES VRMLEAVKIP EARKRITMYP HEFSGGMRQR VMIAMALLCR PKLLIADEPT 
TALDVTVQAQ IMDLLNELKD EFNTAIIMIT HDLGVVAGSC DKVLVMYAGR TMEYGNVNEI 
FYNPSHPYAE GLLKAIPRLD TEGEILPTIP GNPPNLLRLP PGCPYQERCH RVMDRCKREA 
PILTPFGDGR QRACFSEWEA WNK