Gene VEA_002492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002492 
Symbol 
ID8556208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand+ 
Start bp973176 
End bp973802 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content46% 
IMG OID646405571 
Productsigma factor RpoE negative regulatory protein RseA 
Protein accessionYP_003285119 
Protein GI262393265 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0123192 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGACA AAGAAAAACT TTCAGCTCTC ATGGATGGAG AATTGGTCGA TAAGGCTTTA 
ATTCAAGAGT TAGAGCAAGA CCAAGAGAGC CGTGATGCTT GGCAGAACTA TCACCTGATA 
GGTGATGTGA TGCGAGGCGA AGCGCCAGCA AAACCTGAGT GGAATATTGC TGAAAGCGTG 
GCGTTAGCGT TAGAAGATGA ACCTGCACAC CGTGCGTTTG ATGCGCACAG TGCAAATGTT 
ATCTCAATCG CTGATACGCC AAAAGAGTCG CAACCAGAAC CGCAAAAAGC AAAACGTCAG 
TTGCCAGGTT GGTTGACACA GTTTGGTCAA GTTGCTGTTG CTGCATGTGT ATCGCTTGTC 
GTTATTTTAG GTGTACAGCA GTACGGTGGT AGCGATTCAA TGTCGCCGCA AACAGATCAA 
TTACCTGTGT TGCAGACAGT TCCGTTTGCT GGCAGCGCAG AGCCTGTGAG TTTAACTCGT 
GAGTCTGTTG AGCGTTCTGT AGGTGAAGCA AATATGCAAG AGCAACGTAA GCGTGTTCAT 
GCTATGCTGC GAGACTACGA ATTGCAGTTA CGAATTAACA GTGATGCATC TCAACAAGAT 
GCAAATCTGA ATCCGGATAT TGAATGA
 
Protein sequence
MADKEKLSAL MDGELVDKAL IQELEQDQES RDAWQNYHLI GDVMRGEAPA KPEWNIAESV 
ALALEDEPAH RAFDAHSANV ISIADTPKES QPEPQKAKRQ LPGWLTQFGQ VAVAACVSLV 
VILGVQQYGG SDSMSPQTDQ LPVLQTVPFA GSAEPVSLTR ESVERSVGEA NMQEQRKRVH 
AMLRDYELQL RINSDASQQD ANLNPDIE