| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001852 |
|---|
| Symbol | |
|---|
| ID | 8555481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 239171 |
|---|
| End bp | 240997 |
|---|
| Gene Length | 1827 bp |
|---|
| Protein Length | 608 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646404845 |
|---|
| Product | ABC-type dipeptide transport system component |
|---|
| Protein accession | YP_003284480 |
|---|
| Protein GI | 262392626 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT TATTTTTAGC GTCCACGCTG AGCGCCCTGA GTTTTGGTGC AATGTCAGCA
ACGCTTCCGA CTGACTTAAA CTGGCAAACA AACTGGGATG AGCCTCAATA TGGTTCGCCT
GAAGCGAAAC GTGGAGGGAC CTATCGCACC TTCATGTCAA GTTTTCCACA GACGTTACGT
AGTGTTGGCC CAGACGCTAA TGCGGGGTTG CGTTCCTTTA TCTTGGATGA GACCCCTGGA
TTGGTGGTTC GTCACCCAGA TACTTTAGAG TTCATCCCTG AACTTGCTAA CGAGTGGGCG
TTAGCTGGCG ACAATAAAAC CGTCTATTTC AAACTCAATC CAGAAGCCAA ATGGTCGGAC
GGCAAGCCTG TGACTGCCGA CGATTTTGTA TTCATGCTTA AGTTTTATCG TTCTAAGGAT
ATCCTAGAAC CTTGGTACAA CGATTATTAC AACAAAACCA TTGCGGATGT TATTAAGTAC
GACGTTCATA CGTTTGCTGT TAAGGCCGCG AAAGAGTTCA ATCCGGAAGA ATTGTTGCTA
AGAATGGGGG CTTTACGCCC TCGTCCCGCA CACTTTTATG CCAATCCTTC AAAGGATGAA
AATGGTGATG GTATTCACGA CAACTTTGTC CGTTACTACA ACTTTAAGAG TGAGCCAACG
ACCAGTGCAT ACTACCTAGA TGATATCAAA AAAGGTAGAA GTGTGACTTT CAAACATGTT
GGTGAAGATT GGTGGGGTTA CAGCAATAAG TACTACCAAA ATCGCTACAA TGTCGACAAG
ATTCGCATCA CGGTGATCCG CGATAGCGAT ATTGCGATGA AGCATTTTGA AAAGGGTAAG
TTGGATGCAT TTGGTCTGGT TCTGCCAAGC CTATGGCACG ATAAATCGAA CACAGAACCG
TACCAAAAAG GCTACATTCA AAAGTTCTGG GGTTACAACC AATTTCCAGT CGGTGCGGGC
GGCGTATGGA TAAACACCGC GATGCCTTTG CTGGATGATT TAAACGTTCG CAAGGGCATT
ACCTACGCAA TTGATTTTGA TGGCATGATT GAGAACATCA TGCGTGGTGA CTACTCCCGT
AAGCCAAACC CGACGGGTTA TGGCCATGGT AAATACACCC TACCAGACGC GAAAGCACCG
AAATTTGACC CCGCAAAAGC GGCCGAGGCA TTCGAAGCCG CAGGCTTTAA CAAAATTGGT
TCCGATGGTA TTCGTGTCAA TGATAAAGGT GAGCGTTTAA GCTTCGAGCT GACCTACGGA
ACACCTGTTC ATACTCCTCG TATTGCTTTT TTGCGTGAGC AAGCCAAGCT AGCAGGGGTG
GATATTGAGC TCAAGTTGGT TGATGGCTCA TCCATGTTCA AATACGTCCG TGAGAAAAAG
CACGATTTGG CTTTCTTAGA TATGGGTACG TCCGAGATCC CAACGTATTG GGAGTACTTC
CATTCAGTCA ATGCGAACAA GCCGCAAACT AACTCTTTCA CAAACTACAG CACGCCAGAG
CTGGATGAAA AGATCATCGA GTATCGTTTT AGCATGGATA TGGATAAAAA GATCCAGCTA
GGTCATGAGA TTCAGCGTGA CATCATTGAT GCGCACGTTA TCGTAACAGG CTACATGATT
CCTTATGTCC GCTACGGTCA CTGGCGCTGG CTAAAGTTTC CTGATAAGCC AATGAATCGC
ATGACAGAGG CGTTGTTCAG TGGTGGCATC ATAGGGGATG GCACTTACTG GATTGATAGC
GATATCAAGA AAGAAACGAA ACAAGCGATG AAGTCAGGTA AAGCTTTTAA ACCTGTCGTC
GTCGTAGATG ACACTTATAA GCTGTAA
|
|---|
| Protein sequence | MKKLFLASTL SALSFGAMSA TLPTDLNWQT NWDEPQYGSP EAKRGGTYRT FMSSFPQTLR
SVGPDANAGL RSFILDETPG LVVRHPDTLE FIPELANEWA LAGDNKTVYF KLNPEAKWSD
GKPVTADDFV FMLKFYRSKD ILEPWYNDYY NKTIADVIKY DVHTFAVKAA KEFNPEELLL
RMGALRPRPA HFYANPSKDE NGDGIHDNFV RYYNFKSEPT TSAYYLDDIK KGRSVTFKHV
GEDWWGYSNK YYQNRYNVDK IRITVIRDSD IAMKHFEKGK LDAFGLVLPS LWHDKSNTEP
YQKGYIQKFW GYNQFPVGAG GVWINTAMPL LDDLNVRKGI TYAIDFDGMI ENIMRGDYSR
KPNPTGYGHG KYTLPDAKAP KFDPAKAAEA FEAAGFNKIG SDGIRVNDKG ERLSFELTYG
TPVHTPRIAF LREQAKLAGV DIELKLVDGS SMFKYVREKK HDLAFLDMGT SEIPTYWEYF
HSVNANKPQT NSFTNYSTPE LDEKIIEYRF SMDMDKKIQL GHEIQRDIID AHVIVTGYMI
PYVRYGHWRW LKFPDKPMNR MTEALFSGGI IGDGTYWIDS DIKKETKQAM KSGKAFKPVV
VVDDTYKL
|
|---|
| |