Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_001851 |
Symbol | |
ID | 8555480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 238304 |
End bp | 239161 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646404844 |
Product | oligopeptide transport ATP-binding protein OppD |
Protein accession | YP_003284479 |
Protein GI | 262392625 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAAACG ATGTAATCCT AAGTGTTAAA GATCTCGAAG TTGAATTCAC CACCGATGAT GGACCAGTGA AGGTGCTGCA TGGTGTGAAC TTTGATGTGA GAGCTGGACG TACACTCGGT CTGGTGGGAG AGTCAGGCAG TGGTAAGAGC GTAACCTCAA TGTCGATCAT GGGGCTTTTA CCTAAGCCAT ATGGCAACAT CATCAAAGGT GAAGTGAATT ATCGCGGCAC CAACCTAGTT GATTTGCCTG CGGAAGAGAT GTACGCCATG CGTGGCGATC GCATTTCGAT CATCTTCCAA GATCCGATGA CGGCGCTCAA TCCAGTACAC ACTATTGGTC GCCAAATATG TGAAGTGCTT GAACTTCATC GACCTGAGCT CGACAAAAAG GAGCGGGAGG CTTTCTCGAT TGAGATGCTG GCAAAAGTCA AAATCCCAAT GCCAGAGAAA CGATTGAATG AGTATCCCCA TAACCTATCT GGCGGTATGC GCCAGCGTGT CATGATCGCG ATGGCGTTGG CCTGTAAGCC GGATATTCTT ATTTGTGATG AACCGACTAC GGCGTTGGAT GTTACGGTTC AGGCGTCTAT CCTTGAACTG ATGAATGAGC TTCAGGAAGA AACAGGCATG GCGATGATCT TCATTACTCA CGACCTCGGG GTTGTGGCAG AAGTGTGTGA TGATGTTGCC GTGATGTATG GTGGGCGTAT TGTCGAAAAA GCAGAAATTT TTGAGTTGTT TGATAACCCG CAGCACCCAT ACACAGAGCG TTTAATGGGA TTGATGCCGA GCTTAGATAA TGAGCCGAAG CAGATGATCG ATATCAAGCC TATTGATGCC AGTATGTTTG CCAGTTAA
|
Protein sequence | MENDVILSVK DLEVEFTTDD GPVKVLHGVN FDVRAGRTLG LVGESGSGKS VTSMSIMGLL PKPYGNIIKG EVNYRGTNLV DLPAEEMYAM RGDRISIIFQ DPMTALNPVH TIGRQICEVL ELHRPELDKK EREAFSIEML AKVKIPMPEK RLNEYPHNLS GGMRQRVMIA MALACKPDIL ICDEPTTALD VTVQASILEL MNELQEETGM AMIFITHDLG VVAEVCDDVA VMYGGRIVEK AEIFELFDNP QHPYTERLMG LMPSLDNEPK QMIDIKPIDA SMFAS
|
| |