| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001500 |
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| Symbol | |
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| ID | 8559812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | - |
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| Start bp | 1692592 |
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| End bp | 1694838 |
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| Gene Length | 2247 bp |
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| Protein Length | 748 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646409169 |
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| Product | ribonuclease R |
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| Protein accession | YP_003288648 |
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| Protein GI | 262396795 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.77708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTAA ATATATCCGC ACAATCAATA AATTCTAATA ATTACGAGCA CATTATCCCT
AGCCGAGACG TTATCCTTAG CCTCTTCGAT AAAGTTAAAA ATCACTTAAG TCACGAGCAA
ATTTCTCGCT CTACTGGCTT AGATGAGAAA CCACAAAAAG ACGCTTTAAA AAAACGTTTA
CGCGCTATGG AGCGCGATGG CCAGTTGATT TTCACGCATC GCCGTGGTTA TAAAAAAGTC
GATCAAACCG CTTTGGTTTC TGGAAAGGTC AGCATTCACG CAGACGGCTT TGGGTTTGTC
ACTTACGACA GTAATGAAAA AGACCTTTTC TTACCTAAAC ACCAACTTAC TCATGTGTTT
GATGGCGATA TCGTACTGGT TCTGAAAGGC AATGCTCAGC ATCAAGGACG CTCAAATCAT
CGTTTCATCA AAATAGTGGA ACGACAAACA ACCCACATCG TGGGCTTGTT AAAGAGAAAA
GGTTCGAACT TCTATCTAGT GCCAGAAAGC GCGAAACTGA CTCAAACCAT TCATGTCACA
CCAAATGATC TTATCGCCAA AAATGCCGGT AAACTCGTTC ATTGTAAAGT CACGGCCTAC
CCAGATCACA GACAATCAAC AACGGTTGAA GTGGCAGAAG TATTAGGGCG TCCGGGAGAA
GCAGGGATCG AAGTTAAATT GGCGTTACGT CGACATGGCA TCAATGATCA TTGGGATGAT
GAAGTTCTTC ACGCCGCCTC CGCATTTGGC AATCACGTAG AAGAAAAAGA CAAAACGTCC
CGAGTGGATT ATCGAGATTT ACCGTTCGTC ACTATCGATG GGGACGACGC GAAAGACTTT
GATGATGCCG TTTACGCATA CCAAATGGAC AATGGGCATT GGAAGTTATT CGTTGCGATT
GCAGACGTAT CTCACTACGT TCAGCCAAAC GACCATTTAG ATCTTGAGGC GCAATCTCGT
GCAACGTCCG TTTACTTCCC CGGATACGTT GTACCAATGC TACCAGAAAC ATTATCTAAC
GGTTTGTGCT CGCTTAACCC GAATGAAGAC CGATTGGTTA TGGTATGTGA GATGACCTTT
GACGACGAAG GTAACATGCT AGATTCAGAG TTTTCTGAAG GGATCATTCA CTCGCATGCT
CGTTTAACTT ATAACGAAGC TTACCGCATT GTTTCCCAAT CAACGGAAGC AAAAAAATAC
CAAGGTAAGA ACCCAAAGCA AAACATTAAA CAGCATCTGG TGAATCTCCA TCGCTTGTAT
TTGAACCTAT CTGGTCAACG TCAAGTCCGT GGTGCCATTG ATTTTGACAC GCAAGAGCTT
TCATTCACGT TAAACAATAA AAAGAAAATC GCGTCCATCG TTCCGGTAGT TCGAAATGAT
GCCCACCGAA TGATCGAAGA ATTCATGCTG TGTGCCAACG TTGCCACCGC TCAATTTTTG
CAGCAACAAA AAATACCGAG CTTATACCGC GTGCACTCTG GTCCTCAGAT GAAAAAACTG
TCTTCATTAA GAATGATGCT TGCAGAGAAA GGGCTAACGC TTGCGGGTGG TGATAAACCA
ACTTCTCATG ACTACAACGC ATTACTGGAA CAAGTGCGAG ATTTGGATGA GTGTGATGTG
ATTCGTACCC TACTGCTACG TTCTCAGAGT CAAGCCGAGT ATTCGCCGAA GAATATGGGT
CACTTCGGTT TAGCCTATGA CGCATACGCA CACTTTACTT CGCCAATTCG TCGTTACCCA
GACTTACTCG TTCACCGCGC CATTCGCGCT AAACTTCGAG AGCAAAAAAC AGGCAAGCTA
CGCAGTCTGC TCATGAAACT AAAACCTATT CGTCAATTGA CAGGTGCTGC GAACAACTAC
CCTTACGATA CAAAAGTAAT CGAGCAACTG AGCGTGCACT GTTCGCATCA ATCTCGTCAG
GCAGATGAAG TGAGCCGAGA GGTTGAGTCT GCACTGAAAT GTCATTACAT GAAGCCATTT
ATTGGGCAAC ACTTCACGGG GAAGGTGTCT GGAGTCACAC ACTTCGGAGT ATTTGTTGAG
TTAGAGGAAA ACCGAATCGA AGGTCTCATT CCTTTATCAA GTTTTCAAAA TGGTGAGTTC
GAATTTGATG CAGTCAAACA AAAAATTTCT AGCCAGAGCA CCACGTTTAC TTTAGGGACT
AAAGTGCACG TGTTAGTTAA AGACGTCGAT TCGAAACAAA GAAAGATCAT GTTCAATTTA
AAAGATGCAG AACACACGGT TGGTTAG
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| Protein sequence | MKLNISAQSI NSNNYEHIIP SRDVILSLFD KVKNHLSHEQ ISRSTGLDEK PQKDALKKRL
RAMERDGQLI FTHRRGYKKV DQTALVSGKV SIHADGFGFV TYDSNEKDLF LPKHQLTHVF
DGDIVLVLKG NAQHQGRSNH RFIKIVERQT THIVGLLKRK GSNFYLVPES AKLTQTIHVT
PNDLIAKNAG KLVHCKVTAY PDHRQSTTVE VAEVLGRPGE AGIEVKLALR RHGINDHWDD
EVLHAASAFG NHVEEKDKTS RVDYRDLPFV TIDGDDAKDF DDAVYAYQMD NGHWKLFVAI
ADVSHYVQPN DHLDLEAQSR ATSVYFPGYV VPMLPETLSN GLCSLNPNED RLVMVCEMTF
DDEGNMLDSE FSEGIIHSHA RLTYNEAYRI VSQSTEAKKY QGKNPKQNIK QHLVNLHRLY
LNLSGQRQVR GAIDFDTQEL SFTLNNKKKI ASIVPVVRND AHRMIEEFML CANVATAQFL
QQQKIPSLYR VHSGPQMKKL SSLRMMLAEK GLTLAGGDKP TSHDYNALLE QVRDLDECDV
IRTLLLRSQS QAEYSPKNMG HFGLAYDAYA HFTSPIRRYP DLLVHRAIRA KLREQKTGKL
RSLLMKLKPI RQLTGAANNY PYDTKVIEQL SVHCSHQSRQ ADEVSREVES ALKCHYMKPF
IGQHFTGKVS GVTHFGVFVE LEENRIEGLI PLSSFQNGEF EFDAVKQKIS SQSTTFTLGT
KVHVLVKDVD SKQRKIMFNL KDAEHTVG
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