| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001211 |
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| Symbol | |
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| ID | 8559523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | + |
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| Start bp | 1370821 |
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| End bp | 1373151 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646408880 |
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| Product | sensory box/GGDEF family protein ScrC (involved in swarmer cell regulation) |
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| Protein accession | YP_003288359 |
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| Protein GI | 262396506 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGG CCGTTAAAAA AATATCCAGT AAAAAATTTA TTGCAATAAG CGCAATATTA
GTCTCTATTT ATTTAGCTAT GCTTATTGTT GTGACAAGTT TGGGGCAAAA TAAATTAAAA
GAATCCCAAC ATAGGGAACT CGGTTTAAAA GTAAAAAGCT ACGCAAGCAC ACTCGATAAT
TTATTTACCA TTGCCAGTGA GGATGTTGAT AATTTATCTA CAGATAAAAC AGTACAAACC
TTCTTTGCTA ATTTAGCCTC TGGCATGTCA ATGGAGTACG GATTAGGAGC GAGTTTAATT
AACTTGAAGC GTCGTTTCGA TGAAAAGATA GATGGTAAGT TAATTAATAG CAGCCAAATC
TATAAAAAGC TCACACTGGT AGGAAGTGAT GGCACAACGA TTGTCACGAC GGGCTCTGAA
GACAACATAG AGCATAAGAT GGATATCCAA ACCTTAATGA CTCAACATGG GCATCCCGAA
GAGGTTTGTG CAACTCGATA TAACGACGAC GTGCGTATTC AAGTCATTAA GCAAGTTAAG
TTCTCTGGAA AGCCAGTTGC CTTTCTAATT GCAGATCTCA ATAAAAACAT TGTTATTGAT
CAGCTCACTA ATCAAGAGCA CGAAGACAGT TATAGCCGGA TGGTGCTCAA AATAAAAGAC
GTTGAGATGG TCGTATGGGA TACAATAAAT AAAACGTCTT CTCATAATAA AGATGAGAAT
TATTTAATAT CTGAAGCCGT TGATGGAAAG ATATATTTTG AAGTGCCTGT TGAAAAACAT
CACTTCAAAC TTATGGCTTG GTTTGAGCCT TTGAGTGAGC GAGATATTTT CACATCACGG
ATCTTCATTC TCGGTTTGAG TATTCTTGCT GTTATGGTTG TTATTGCGCT GTGTTATGCG
TTCATCACAA ACAATAATAG AATTGAATTG AAAATTAAAC TTGAAGAAGA GAAAAAGCGA
AAAGACATTC TTTCTCAACA GAACCAAAAA CTAACTAACG AAATTGAACG CCGAAAAGCG
TCTGAAAAAG AACTCGCCTT CCAAGCTAAA TACGATACGT TGACTAACTT GCCTAATCGC
AGCTACGGTT CTGAGAGACT GGCTTTGGAG TTGATTAGAG CGTCACGTAG TGGCTCAAAA
GTATTGGTCA TGTTTATTGA TTTAGACCAC TTTAAGCAGA TTAACGATTC AATGGGTCAC
TTTGTTGGCG ACGAGATCCT TAAACTTAGT GCTCAACGAC TGCATCAAGT CGCGAGAAAA
ACAGACTTAC TGGCGAGAAT TGGTGGGGAT GAGTTTTTAT TAGTGATTCC TGACTTGCCT
GATAATGACA CCGCGAAGCG CGTTGCTTCA AGCGTGCTTT CGGCGTTTAA CGATCCATTT
GTATGGAACA ACCATGAATT CTTCTTGAGT AGCAGCGTCG GAATGTCTGT ATTTCCGGAT
GATGGAGATA ATGCCGAGCA GCTCCTCGCC TGTGCTGACA TGGCGATGTA TCGCGTGAAG
CAAGATGGAC GCGATGCCTT CTGCTTTTAT AACCACAATA TGAACCAAGA CTTGCAACGC
TATTTGGATT TGGAAAATCG ACTAAGAAAT GCCATCTCTA GTCAATTACT AGAGTTGTAT
TATCAACCTA TTATTGAGCT GAGCAGTGGT AAAATTGTTG GCGCAGAAGC GTTAATGCGT
TGGAATGATG AGAAGTACGG ATTCGTAAAT CCTGAAGAGT TTATCTCTAT TGCTGAGAAA
AATGGCTTGA TTCATCAAAT TGGTGAATTC GCTATCCAGC AAGCGTGCCG CCAAGCGGCG
CAATGGCAAA GTCTGACGCC GCTGTTTGTT TCTGTGAATT TCTCCAGTGT TCAATTTAGG
TATTGTGATC GCTTACTTGC GTTTATTAAG AAGAGCCTTG AGGAGTCTGG TCTTCCATCA
GATAAGTTCG ATATTGAAGT GACTGAGAGC CTTCTCTTTA ACCACGACTC AGAGCTATTA
GACATGCTCA ATAACTTAAG AGCGTTAGGC ACTAAGCTTA CCATCGATGA CTTTGGTACT
GGCTATTCTG CGTTGAGTTA CTTACAGAAA TTCCCGTTCG ATCGCCTTAA GATTGATCGC
AGCTTTATGC AAAATATGTT CGAAAACGAC TCCGATCGTG AGCTCGTCAA CGTGATCATT
GCAATGGCGA AAGCGCTGAA CCTTAAGATT GTTGCTGAAG GCATTGAAGA ACAGCGTCAT
GTCGATTATC TAAAAGGCTT AAACTGTGAG TTCGGGCAAG GTTTCCACTA TAGCCGCCCG
TTACCAGCCA AAGACTTTGA AGCACTACTT AAACAACCAA CTGGGCGATA A
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| Protein sequence | MKKAVKKISS KKFIAISAIL VSIYLAMLIV VTSLGQNKLK ESQHRELGLK VKSYASTLDN
LFTIASEDVD NLSTDKTVQT FFANLASGMS MEYGLGASLI NLKRRFDEKI DGKLINSSQI
YKKLTLVGSD GTTIVTTGSE DNIEHKMDIQ TLMTQHGHPE EVCATRYNDD VRIQVIKQVK
FSGKPVAFLI ADLNKNIVID QLTNQEHEDS YSRMVLKIKD VEMVVWDTIN KTSSHNKDEN
YLISEAVDGK IYFEVPVEKH HFKLMAWFEP LSERDIFTSR IFILGLSILA VMVVIALCYA
FITNNNRIEL KIKLEEEKKR KDILSQQNQK LTNEIERRKA SEKELAFQAK YDTLTNLPNR
SYGSERLALE LIRASRSGSK VLVMFIDLDH FKQINDSMGH FVGDEILKLS AQRLHQVARK
TDLLARIGGD EFLLVIPDLP DNDTAKRVAS SVLSAFNDPF VWNNHEFFLS SSVGMSVFPD
DGDNAEQLLA CADMAMYRVK QDGRDAFCFY NHNMNQDLQR YLDLENRLRN AISSQLLELY
YQPIIELSSG KIVGAEALMR WNDEKYGFVN PEEFISIAEK NGLIHQIGEF AIQQACRQAA
QWQSLTPLFV SVNFSSVQFR YCDRLLAFIK KSLEESGLPS DKFDIEVTES LLFNHDSELL
DMLNNLRALG TKLTIDDFGT GYSALSYLQK FPFDRLKIDR SFMQNMFEND SDRELVNVII
AMAKALNLKI VAEGIEEQRH VDYLKGLNCE FGQGFHYSRP LPAKDFEALL KQPTGR
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