| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2817 |
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| Symbol | mshI |
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| ID | 5136897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2967382 |
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| End bp | 2968821 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640534261 |
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| Product | MSHA biogenesis protein MshI |
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| Protein accession | YP_001218667 |
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| Protein GI | 147674439 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3166] Tfp pilus assembly protein PilN |
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| TIGRFAM ID | [TIGR01709] general secretion pathway protein L |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAC CGAGTTGGAT AGAGAAACTG ATTGCCCCTA AGGTTGCCTC GCAACAGTTA
TATGTTGTGG TGCAGCCAGA GCACCTGCAC TTCACATCCG ATGATTTATC GCCTATTCCT
CCCCAGCCGT TACAGCAACA AAGTTGGCAA GCGGTATTGG TGCAAACGCT GCAAAAGCAC
GCTGTCCATG ATGTACAAAT CCACCTTGTA CTGCATTCAC AGCTTTATCA AACTTATCAG
ATTGAACAGC CGAGTATTCC GCGTGAAGAG TGGTCGGCAG CCTTGCCTTT CTTGCTCAAA
GATATGTTGA GTGAGAAAGT GACGGATGTA GTGGCGGATG CTCACCCTCT TCCCGGCAGT
GGTAAAGTAC AAGCCTATGT GATCAGCAAG CGTACTATTC TTGAGTTGCA AAGCATGGCG
GTGTCGGCGG GATTAACGCT AGGACGAGTG ATCCCCGAGC AAGCGATTTG GGGATTGGTG
GGCGGAGAAT TGAGCCACTT CCTGTTGCTG CATCGCAGCA TGGGTGGCAG CTTTAAGCTG
GATGCTTTCG TTGATCGTCA GTGCAGTTTT CAACGCACTT TACGTGGGAT CACTGCGCCT
GTGACTGATA ACGCAGCCAG TGCCCTTCAG TTAGATAGCT TGGCGTTAGA GCTACAGCGC
TCGATTGATT ACTTATCCGC CCAGTTAAAG GGCGGCTCTT TACAACAGCT AAAAGTGTGT
TGTGATGGTG AAGATCAACA GGCTTTGATC ACCGGACTCA ATGAGCGCTT AAGTGTGCGA
GCGTCAGGAC TGGATGGTGA AGCGACCATC TGTGGTGAAC AACTGGCACG TTATGCGCGC
AATATCCCGC AAGAAACCAT CAATTTCTAT CAAGATCACC TCAAGCCGAA GCGTGAAAAG
TTCACCTTAA CCAATCTCTT GTTAGCGTGG TTGGCCTTGA GCGTTGTGTT ATTGCTTGGG
TACGCAGGGG TGGGTTATCA AAACTGGGTG ATCCAACAGC AGTGGCAAGA GCAGCAACAA
CATAATCAAT CGTTAACAGA ACAAGCGGCT CACTTACGTC AGCAGGTGGC GGTTCATCTT
CCTTCGCCCG CTAAACAGGC GGCGATAGGG CGCATAAAGC AAGAGATCTC TAGCAAACAG
CAAGCATTAG ACGCGATTGG GCAGTTTGAT GTGGCTCAGC AAACGGGCTA TTCCGGCGTA
TTGAACTCTT TGGCTCAATT GGCGCGTAGC GATATCTCTT TAAGCAGTAT TACTTTGGAT
TCCTCGCAAT TAAATGTGCA GGGACTCGCT CGTGATCCTG CCGCGATTCC AAACTGGATC
AGTCAATTTA AACAAGAACT GCATCTGATG GGCAGAAGCT TTGAGCAACT GAAAATTGGC
CGTAATGATC AAGACATGAT CACCTTTGAA CTCAACACTC AGCGAGGAGA ACAAAGATGA
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| Protein sequence | MKKPSWIEKL IAPKVASQQL YVVVQPEHLH FTSDDLSPIP PQPLQQQSWQ AVLVQTLQKH
AVHDVQIHLV LHSQLYQTYQ IEQPSIPREE WSAALPFLLK DMLSEKVTDV VADAHPLPGS
GKVQAYVISK RTILELQSMA VSAGLTLGRV IPEQAIWGLV GGELSHFLLL HRSMGGSFKL
DAFVDRQCSF QRTLRGITAP VTDNAASALQ LDSLALELQR SIDYLSAQLK GGSLQQLKVC
CDGEDQQALI TGLNERLSVR ASGLDGEATI CGEQLARYAR NIPQETINFY QDHLKPKREK
FTLTNLLLAW LALSVVLLLG YAGVGYQNWV IQQQWQEQQQ HNQSLTEQAA HLRQQVAVHL
PSPAKQAAIG RIKQEISSKQ QALDAIGQFD VAQQTGYSGV LNSLAQLARS DISLSSITLD
SSQLNVQGLA RDPAAIPNWI SQFKQELHLM GRSFEQLKIG RNDQDMITFE LNTQRGEQR
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