| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2816 |
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| Symbol | mshH |
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| ID | 5137510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2965348 |
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| End bp | 2967369 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640534260 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_001218666 |
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| Protein GI | 147674143 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 51 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCACAAA TGAGGTATAC ACCGACATTA AAACTGAGCA CTCGGTTAGT GGCGTTCGTC
ACTATGACGG TGATCAGTGC CATGTTTATC CTGTTCCTTG GTGGCACCTT ATCTTTTCAG
CGTTTGGGGC AGGAATACCT CAACCACTAT CTACAAGGGA TAGTTGAGGT TGTCGATAAG
GAGATGGAAG ATCCAGACGC CGCTTACTCT ATGCAGCGTT GGATGCCCAA AATGCTTCAA
GCGAGTGGCA TCATTGAAAT GCAGCTTACT TCCGAAGCGG GCCCCATCTA CCGTTTTAAA
GACACCACCA ACACCATTGA AGCTTCACGT TTGCATCAAG TCGCTTTACC GCTCAAACGT
AATCCCGGTT ATGTGATGCA TTTTAAAGCG GTGCCTCCCT ACCTCAATTA CAACTATTCA
CTGCAAGCCA TGTGGTCGAC CACCTTAGCG GTGCTACTGA TCGTATTTTT CTTGATCCGC
GGTCTGAAAT GGTTGAAAGA GCAACTACTA GGATCGGAGT TACTGGAAGA GCGAGGACGG
ATGATTCTTG CTGGACGAGT GGAGCAACAT GCCAAGGGGG ATCCGCGAGA GTGGCCTTTC
ACCGCAAGTG AAGCCTTAGA TCGCTTGATT GAAGAGTTGC AAGATGCCCG TCAAGAACGT
AGCCGTTTTG ATACCTTTAT TCGTAGCCAA ACCTTCCTCG ATCAACTGAC CGGGACGGCG
AATCGGGTGT TGTATGACAG TAAGCTGGAA TCGGCTTTAC TGGAGAGTGG CGCTCACGGC
GGCGTTATGA TGCTGCGGGT CGATGACTTA GAGTCAGCGC GAGAAGAGAG CCCTAAACGT
ACGCTCGATG AGTTTATCAT TGAGGTGGGG GAGTGTTTAT CCAACATAGT ACAGCGTTAT
CCGGATGCCA TACTTTCTCG CTACTATGAG GATGTGTTTG CGCTGTTTAT TCCTCATCAG
GGTAGTAAAG ATATTGCTCA AGTAGCGACA CAGGCGATTA AGTTGATTGA GCGCATCAAT
CCCCCTGAGC CACTGCCAGA AGACAATTGG TTCCACATTG GTGTAACCAT GTATCAAGAA
GGTGAGCGGC GTGGACGGAT TATTGATGAG ATGGAAACCG CGCTCAAAAG TGCTCAACTG
CAAGGGGTGA ATGCGTGGAG CCGTTTTCAA AAACCTAAAC AGTTACAAGA GGATCGCGGT
AGCGTTCGGT GGCGTACATT GTTTGAACAG GTGCTTCGTC CGGAAGAGAT TTTGCTCTAT
CGCCAAGCCT GTTATCGTAT TTCTGCTAAT GGAGAGCGGG AGTTCCTACA TTATGAGTTA
TTTGCGCGTA TTCAGGATCC GCAACAAGGC ATTCTCAAAG CGTCGCGTTT TAGCTCAGCT
TTAGAAACGG TCGGCTATGA AGCCATGTTG GATCGTGCCG TATTCAGCTC TGTCGTGAGT
TTTTTGAAGC GCTCTGAACT GGTTGAACCA CTCTCGGTAA ACTTGCACGT TGTTCCATTT
AACGATAAAC GGTATGCTCG CTGGATTCGC AACGAATTGA TGCAGATGCC TTTTTCTCTT
AGAACGGCGC TCTCTTTTGA GTTTTCAGAA GCGCATTTGG TCAACCATTT AGACTATATG
CGCCCCATCA TTCGCATGTT GGCGGGGCTG GGTTGCAAGA TAGTGGTGGG ACAAGCGGGA
CGAACAATTG TCAGCACGCA CTATATCAAA GACTTAAAAG TCAACTATCT TAAACTTCAT
CGGAGTTTGA TAAAGAAAAT TGACCAACGC CATGAAAATC AGCTGTTCGT TCGCAGTTTG
GTAGGTGTAT GTGGCGGTAC CCAAGCAGAA GTGGTTGCGG TTGGGGTTGA AACTACTCAA
GAGTGGCAAA CCTTACAGAT GCTGGGTGTC AGTGGTGTGC AAGGTCGCTT GTTTGATGAG
GAGCAACAGA TGTTGCCTCC TTTGCCACCA GAGCCATTGA AACGCCCCCC GCGTCTCTCT
GTAAAGCCCA TCGGCAAACG TAATCGATGG CGAACCAAAT AG
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| Protein sequence | MAQMRYTPTL KLSTRLVAFV TMTVISAMFI LFLGGTLSFQ RLGQEYLNHY LQGIVEVVDK
EMEDPDAAYS MQRWMPKMLQ ASGIIEMQLT SEAGPIYRFK DTTNTIEASR LHQVALPLKR
NPGYVMHFKA VPPYLNYNYS LQAMWSTTLA VLLIVFFLIR GLKWLKEQLL GSELLEERGR
MILAGRVEQH AKGDPREWPF TASEALDRLI EELQDARQER SRFDTFIRSQ TFLDQLTGTA
NRVLYDSKLE SALLESGAHG GVMMLRVDDL ESAREESPKR TLDEFIIEVG ECLSNIVQRY
PDAILSRYYE DVFALFIPHQ GSKDIAQVAT QAIKLIERIN PPEPLPEDNW FHIGVTMYQE
GERRGRIIDE METALKSAQL QGVNAWSRFQ KPKQLQEDRG SVRWRTLFEQ VLRPEEILLY
RQACYRISAN GEREFLHYEL FARIQDPQQG ILKASRFSSA LETVGYEAML DRAVFSSVVS
FLKRSELVEP LSVNLHVVPF NDKRYARWIR NELMQMPFSL RTALSFEFSE AHLVNHLDYM
RPIIRMLAGL GCKIVVGQAG RTIVSTHYIK DLKVNYLKLH RSLIKKIDQR HENQLFVRSL
VGVCGGTQAE VVAVGVETTQ EWQTLQMLGV SGVQGRLFDE EQQMLPPLPP EPLKRPPRLS
VKPIGKRNRW RTK
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