Gene VC0395_A2572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A2572 
Symbol 
ID5136824 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp2723532 
End bp2724200 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content51% 
IMG OID640534021 
Producthypothetical protein 
Protein accessionYP_001218451 
Protein GI147675763 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAAA TGTCCATTTT AGCCACCTTA GCCGGTGTGC ATTTTATTGC CTTATTAAGC 
CCGGGGCCTG ATGTCGCCTT AGTGGTGCAA AACGCTACAC AGCACGGGCG TAAAACTGGC 
GTGATGATCG CGTTAGGTTT GTCGTGCGGC ATTTTAGTCC ATTTGATTTT GAGCCTGTCC 
GGCATTAGCT ACTTAGTCAA ACAGCAGCCA ATGCTGTTTA ACCTGTTACA ACTGGCCGGC 
GGCAGCTACT TGCTTTATTT AGGGGCCGGC GCTTTGCAAT CAGTGATGGC GCAAAAAAAC 
GCTAGCACAC CGACGCACAG CCCTGCGCCC TCCATTCTCG GCAACCGCCG TCAAGCCTTC 
ACAAAAGGCA TGATGACCAA TCTCTTGAAT CCCAAAGCTC TCGTGTTTTT TGTCAGCCTG 
TTATCTAGCC TGATCCCAGC CAGCATGTCT GTGTCTGGCA AGGTGAGTGC CGCTGCGATT 
TTGGTTGGCT TATCCCTAAC TTGGTTCTCC TGTTTAGCTT GGCTGCTTAC CACGTCTGCC 
ATGCAACAAC GCATGCAGCG CATTACGCGA TCCGTCGATA GCATATGCGC TGCGGTGTTT 
ATCTTGGCCG GTGGCGTGAT TTTATGGCAA GCAAGCCGCG CTATAGCACA AACCTTCGGA 
TGGCTATGA
 
Protein sequence
MNEMSILATL AGVHFIALLS PGPDVALVVQ NATQHGRKTG VMIALGLSCG ILVHLILSLS 
GISYLVKQQP MLFNLLQLAG GSYLLYLGAG ALQSVMAQKN ASTPTHSPAP SILGNRRQAF 
TKGMMTNLLN PKALVFFVSL LSSLIPASMS VSGKVSAAAI LVGLSLTWFS CLAWLLTTSA 
MQQRMQRITR SVDSICAAVF ILAGGVILWQ ASRAIAQTFG WL