Gene VC0395_A2555 details

Gene Information

• Locus tag: VC0395_A2555
• Symbol: rep
• ID: 5135788
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2705079
• End bp: 2707094
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640534004
• Product: ATP-dependent DNA helicase Rep
• Protein accession: YP_001218439
• Protein GI: 147674491
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases
• TIGRFAM ID: [TIGR01074] ATP-dependent DNA helicase Rep

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.00000000000614472
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCTGA ACCCAAGACA AGATGAAGCG GTCAAGTACG TCTCCGGACC CTGTCTGGTA 
TTGGCGGGGG CGGGTTCGGG TAAAACACGC GTCATCACCA ATAAAATTGC CTATTTGGTT 
CAGCAATGTG GCTATAAAGC ACGCAATATT GCTGCGGTTA CGTTTACCAA TAAAGCGGCG 
CGTGAGATGA AAGAGCGCGT AGCTCAAACA CTCGGTAAAG GTGAGTCGCG CGGCTTAATG 
GTGTCGACCT TCCATACTCT TGGCTTAAAC ATCATTCGCC GTGAGTTTAA AGCTTTGGGC 
CTCAAAGCGG GTTTTTCACT GTTTGACGAC CAAGATCAGC TCGCGTTACT TAAAGAGCTG 
ACCGAAAAGC AGCTCGACGG CGATAAAGAT CTGCTGCGCT TGCTACTGAG CACCATTTCC 
AACTGGAAAA ATGACATGCT GACTCCGCCG CAAGCCAAGG CAATGGCGAA AGGGGAACAG 
CAGCTGCTTT TTGCACACTG CTTTGAGCTT TACCAAAAAC AGATGCAGTC TTACAACGCA 
CTCGATTTCG ATGATTTGAT ATTGCTGCCG GTGTTACTGC TACGCAGCAA TGAAGAAGTA 
CGCCAACGCT GGCAAAATCG GATTCGCTAT CTGTTGGTGG ACGAATATCA AGATACCAAC 
ACCAGCCAAT ATGAGTTGGT CAAACTCTTA GTGGGTGAGC GTGGCCGTTT AACTGTGGTG 
GGAGATGATG ACCAATCCAT TTATTCATGG CGTGGTGCAA AACCACAAAA CTTGGTGTTA 
CTTGGGGAAG ATTTTCCGAG TTTAAAGCTG ATTAAGCTCG AACAAAATTA TCGCTCGACC 
AGCCGCATTT TGCGTGCGGC GAACATTTTA ATTGCCAATA ACCCCCACGT TTACCAAAAG 
GCGCTCTTTT CTGAGTTAGC GGAAGGGGAA AAGCTCAAGG TCATACTGGC CAATAATGAA 
GATCATGAAG CAGAGCGAGT GATCGCAGAA ATCATCGCCC ATAAGTTTCT CAATCGAACC 
GAATACCGAG ATTACGCGAT TCTTTATCGC GGAAACCATC AATCGCGACT GATTGAAAAA 
TCGCTGACTC AAAACCGTGT GCCGTACAAA CTTTCCGGCG GCACTTCGTT TTTTGCGCGC 
GCAGAGATCA AAGACATCAT GGCTTACCTG CGAGTGCTGG TGAACCCTGA TGATGACAAC 
GCATTTTTAC GCATTGTGAA TACACCGAAG CGTGAAATCG GCCCAGCTAC GCTCGAAAAG 
TTAGGCAGTT ACGCCAATAT GCGGGGCAAA AGCCTATTTA CCGCCAGTTT TGAGCTCGGT 
TTAGAGCAGC ATTTGAGCGG GCGAGGGCTT GAGAACTTAC GCCGCTTCAC TGAGTGGTTG 
GTGGCGATTG CCGATAATGC TGAGCGGGGT AACACGGTGG AAGCGGTGCG CGCATTAGTG 
CGTGATATTC GTTACGAAGA TTGGTTGTAT GAGACTTCCG CCAGTCCGAA AGCGGCCGAA 
ATGCGCATGA AAAACGTCTC CGATCTCTAT TCATGGATCG TGGCCGATTT GGAAGGCGAT 
AATCCCGATC AGCAAGAGAA AACTCTGAAA GAGGTGGTGC AGCGTTTAAC TCTGCGCGAC 
ATGATGGAGC GTGGCGAAGA GAACGATGAC AGTGATGCGG TACAGCTGAT GACACTGCAC 
GCCTCAAAGG GCTTAGAATT TCCGTACGTG TATTTGATTG GAGCTGAAGA GGGCATTTTG 
CCGCATCAAA CCAGTATTGA TGAAGAGAAT GTCGAAGAAG AGCGCCGCTT AATGTACGTT 
GGGATCACCC GAGCACAACG CGAGCTAACG TTTATCGTGT GTAAAGAGCG CCGTCAGTTT 
GGTGAACTGA TCAAACCTTC GCAAAGCCGC TTTTTGGATG AGTTGCCCCA GGACGATATC 
GAGTGGGAAG TAAAGAAAAA GCCCGTCACC CAGGAAGAGC GTATGGCCAA AGGCCAAGCG 
CATATCGCTA ATTTAAGAGC GATGTTTAAG AAGTAA 

 

Protein sequence

MKLNPRQDEA VKYVSGPCLV LAGAGSGKTR VITNKIAYLV QQCGYKARNI AAVTFTNKAA 
REMKERVAQT LGKGESRGLM VSTFHTLGLN IIRREFKALG LKAGFSLFDD QDQLALLKEL 
TEKQLDGDKD LLRLLLSTIS NWKNDMLTPP QAKAMAKGEQ QLLFAHCFEL YQKQMQSYNA 
LDFDDLILLP VLLLRSNEEV RQRWQNRIRY LLVDEYQDTN TSQYELVKLL VGERGRLTVV 
GDDDQSIYSW RGAKPQNLVL LGEDFPSLKL IKLEQNYRST SRILRAANIL IANNPHVYQK 
ALFSELAEGE KLKVILANNE DHEAERVIAE IIAHKFLNRT EYRDYAILYR GNHQSRLIEK 
SLTQNRVPYK LSGGTSFFAR AEIKDIMAYL RVLVNPDDDN AFLRIVNTPK REIGPATLEK 
LGSYANMRGK SLFTASFELG LEQHLSGRGL ENLRRFTEWL VAIADNAERG NTVEAVRALV 
RDIRYEDWLY ETSASPKAAE MRMKNVSDLY SWIVADLEGD NPDQQEKTLK EVVQRLTLRD 
MMERGEENDD SDAVQLMTLH ASKGLEFPYV YLIGAEEGIL PHQTSIDEEN VEEERRLMYV 
GITRAQRELT FIVCKERRQF GELIKPSQSR FLDELPQDDI EWEVKKKPVT QEERMAKGQA 
HIANLRAMFK K