| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2322 |
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| Symbol | |
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| ID | 5137707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2477775 |
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| End bp | 2480324 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640533777 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001218237 |
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| Protein GI | 147673341 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGATTAG AGAAGGGTAT GCCTTTAAAA CGCCAAATTC GCTTAAAAAC CGCCATCATA
CTGCCGTTTG TCTTGACCTT TCTGTTCATG ATTTTGGCAA TGGCGGCGGT GCAAACCTAT
CGTTATGAGC AAACGGTAAA AGAGCTCAGC TCTAAGAAGT TATCTTATCT GACTGATAGC
ATCTCACAAC GCTTGTCGGA CTTTCTTAAT CGCCCTTTTT TTGCCAATCA GATGATTGCC
TACAACGTGG GCTTTCACCA TCTTTATCAG CTCAATGACG TAAGTCGAAT TGAAGACTTC
ATTCGTGCGG CAGCCAATCC CATAGGTAAC AATATCCAGC AAATCGACGT GGTCGGTTTT
GGTGGAGTGA ATGGTGAATA TGTAGGACTG CGTCGAGATG CACCAGAGCA ATACAGCCTA
ATGCTCAAAG ATGCACGCAC TGACGATAAA CTAGTTATTT ATCAAACTGC GACAAAGAAT
GATCAATTGC GTACGGTGAT TGATAACTAC GATCCTCGCG TGCGGCCTTG GTTTGCCCCC
GTCGCGCAGA AGCCATCGCC ACAATGGTCT TCGGTTTATA CCAATATGGA TGAGAAGCAA
GAGATCACTC TCTCCGCACT CAGCCCGGTT TTTCAGGATA AAAGATTTAT TGGCGTCATG
GTTTCTGATG TCAAACTCAA TACGTTCAAC CAGTTTCTCT CCGAACTCAA ACAACGTATG
AATGCTGACG TTTATGTGAT GGACAAACAG CACCGCCTGA TTGCCCATTC CGGTGAGGGT
AGCGTGGTTT CTTGGGGGAC ACCGTTAAGC CCGAAAGGTG AAAGGCTGTT CGCCAGCGAG
AATCGTAACC CCATCATTCG TAGCAGCGCC GAACAACTTG ATCTGCAAGG CCTAAATGTG
GGTACTTTTA CTACCTACGT CAATCAACAG CGCTATTTCA ATCAAGCCTC AGCCTTTACC
GATCAATATG GCCTCACTTG GTATATCAGT GTTTCCATCG CGGAAGGGGA TCTCCTAGGC
AGCTTACCTG AAAATCAAAA AACCAGTTGG GCGATAGGAT TATTAGTGAG CTTAGTGGGT
TTAGGGCTCG GCTTAATGGC ATTAAACCGC GTCGCCAACC CGATCATTTC TACCGCCTCG
GCAGCAAGAC AACTTGCCAA TGGTGACTGG ACAGCCAGCA TGCCTAAGCC CGGTAAAATC
TATGAGACCA GTTTGCTTGT CCAAGCCTTT ATTGAGATGA CCAATAGCCT CAAAGCCTCA
TTCAAAGCGC TACGCTCACA GTTGGTCTAC GATTCTCTGA CCCAACTTCT TAGCCGAGAG
GGGTTAGTTG AGCATTGTCA TCAAATCCCG CAACTCAACG GGGGCCTTAT CCTGATTGGG
ATTGATAAAT TTCGCGATAT TAACGACAGC TTAGGTCACC ATCAGGCCGA TCAACTGCTG
GTTGCTATTG CTCAAAGACT GAAAGTAACG TTTCCCGAGC CCGCTCTGAT TGCTCGGATT
GGTGGCGATG AATTTGCTAT CTACCTACCC GATGTGAATC AGCAAGATGA TTTAAAAAGT
GTGGCTACCG ATATTCTCAA GCTGTTTGCC TCTCCATTTA GCATGCCAAG CGACAATATT
GCTGTGAATG TGTCGATCGG AATTGTGTAC CTTGAAGAAC CGAATATGAC CGTTTGGCTG
CGTAATGGTA GCATCGCCCT CAGTAACGCA AAGGCAGAAC ATACGCATAT CAGTTTTTAC
TCACCAGAGA TGGCGAATGC TTCACGCAAA AGAATGCTCA TGGTCACGCA GATAAAACTG
GCGCTCGATA ATCAAGAGTT CGTTCCCTTC TATCAGCCGA TAGTCGATTT AAATAGTGGT
GAAGTATTAG GCGCAGAAGC GCTTGCTCGT TGGATTTCCC CTGAATTCGG CTTGATCCCA
CCAATGGATT TTATTCCGAT TGCAGAAGAG AGCGGATTGA TCAATGCGAT TGGCGAGCAG
ATCTTACGTC AAGCCTGTGC TGATACCGTT CGTGGTATTG CAGAAAATAA ATGGCCATCG
ACGTTCCATA TGCATGTCAA TCTATCGGTT AATCAACTCT CTCATCCCGA TTTTATCGCT
CAGTTACACA GCGTATTAGA CGAATCCGGC CTACAGCCTA CCAACCTGAC ACTCGAAATC
ACCGAATCAC GCATTGTCGA TAATGACCCC GTTATCTTGC ACAATATGCT TGAGTTGAAA
AAAGCAAGAA TACACATTGC AATCGATGAT TTTGGTACAG GCTATAGTTC TCTCGCCTAC
TTACACAAAC TTCCCTTCGA TTGCCTAAAA ATTGATAGAG AATTTGTCTC TCAACTCAAT
GCATACAATA TTGAAAACAG CGTGGTAGCC GCGATCGTTA ACATGACTCG CGGTTTTAAA
GTCGAGCTGG TCGCTGAAGG CATAGAGACT CAAGAGCAGG TGGATTTACT GAATCAACTC
GGTTGCCCAC GCGGGCAAGG CTTCTTATTC AGTAAACCAA TGGCTTATCA GGATTGGCCA
ACAGATCTGG TTAACATGAA GCAAAGTTAA
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| Protein sequence | MRLEKGMPLK RQIRLKTAII LPFVLTFLFM ILAMAAVQTY RYEQTVKELS SKKLSYLTDS
ISQRLSDFLN RPFFANQMIA YNVGFHHLYQ LNDVSRIEDF IRAAANPIGN NIQQIDVVGF
GGVNGEYVGL RRDAPEQYSL MLKDARTDDK LVIYQTATKN DQLRTVIDNY DPRVRPWFAP
VAQKPSPQWS SVYTNMDEKQ EITLSALSPV FQDKRFIGVM VSDVKLNTFN QFLSELKQRM
NADVYVMDKQ HRLIAHSGEG SVVSWGTPLS PKGERLFASE NRNPIIRSSA EQLDLQGLNV
GTFTTYVNQQ RYFNQASAFT DQYGLTWYIS VSIAEGDLLG SLPENQKTSW AIGLLVSLVG
LGLGLMALNR VANPIISTAS AARQLANGDW TASMPKPGKI YETSLLVQAF IEMTNSLKAS
FKALRSQLVY DSLTQLLSRE GLVEHCHQIP QLNGGLILIG IDKFRDINDS LGHHQADQLL
VAIAQRLKVT FPEPALIARI GGDEFAIYLP DVNQQDDLKS VATDILKLFA SPFSMPSDNI
AVNVSIGIVY LEEPNMTVWL RNGSIALSNA KAEHTHISFY SPEMANASRK RMLMVTQIKL
ALDNQEFVPF YQPIVDLNSG EVLGAEALAR WISPEFGLIP PMDFIPIAEE SGLINAIGEQ
ILRQACADTV RGIAENKWPS TFHMHVNLSV NQLSHPDFIA QLHSVLDESG LQPTNLTLEI
TESRIVDNDP VILHNMLELK KARIHIAIDD FGTGYSSLAY LHKLPFDCLK IDREFVSQLN
AYNIENSVVA AIVNMTRGFK VELVAEGIET QEQVDLLNQL GCPRGQGFLF SKPMAYQDWP
TDLVNMKQS
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