| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2321 |
|---|
| Symbol | ntrC |
|---|
| ID | 5137057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2476328 |
|---|
| End bp | 2477734 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640533776 |
|---|
| Product | nitrogen regulation protein NR(I) |
|---|
| Protein accession | YP_001218236 |
|---|
| Protein GI | 147674381 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCTATGA GTAGAGGATA CGTCTGGGTT GTCGATGATG ATAGTTCCAT TCGCTGGGTA
ATGGAGAAAA CGCTCTCTTC AGCCCATATA AAATGCGAAA CCTTCGCAGA TGCGGAAAGC
GTACTGCTGG CACTGGAGCG TGAAACCCCC GACGTTCTTG TCTCAGATAT TCGCATGCCA
GGGATGGATG GCATTGCTCT GCTCAATCAA GTACACCAAC GCACCCCTGA ACTTCCGGTG
ATCATTATGA CCGCGCATTC GGATCTGGAT GCCGCCGTCA ATGCCTACCA ACAAGGTGCC
TTTGAGTATC TTCCCAAGCC TTTTGATGTC GATGAAACCC TCACCTTAGT CGAACGTGCC
ATCGCTCATG GTCAAGAGCA GCGCAAGACA TCTCATCGTC CCAGTGAAAA CTATTCCGCC
CCTGAAATCA TTGGCGAAGC GCCGGCTATG CAAGAAGTGT TTCGCGCAAT TGGTCGCTTA
TCACGCTCTT CGATTTCGGT ATTGATCAAC GGTGAATCGG GAACCGGTAA AGAATTGGTC
GCTCATGCTC TGCATAGACA TAGTCCTCGT GCCCAAAAGC CGTTTATTGC CCTCAATATG
GCGGCGATTC CCAAAGATCT CATCGAATCT GAACTGTTTG GCCATGAAAA AGGCGCGTTT
ACTGGTGCAA ATACCGTGCG CCAAGGTCGC TTCGAACAAG CCAATGGCGG CACTTTATTT
CTTGATGAAA TTGGCGATAT GCCGCTCGAT ATTCAAACTC GGTTATTGCG CGTGTTGGCG
GATGGTCAGT TTTATCGCGT TGGCGGTCAT GTCGCGATAA AAGTCGATGT GCGAATCGTC
GCAGCCACTC ACCAAAATCT TGAAAAACTG GTTCATCAAG GCAAATTTCG TGAAGACTTA
TTCCATCGTC TGAACGTTAT TCGCATCCAT ATCCCGTCAC TGCGTGAACG TCGACAAGAT
ATTGAAAAGC TCACTAAGCA CTTTTTAGCG CTGGCAGCCA AAGAGCTCGG AGTGGAGATG
AAAACGCTCA ACCCGCGCAC CGTGGATATT CTGACCAAGC TCGATTGGCC GGGTAACGTG
CGCCAACTCG AAAACATGTG TCGCTGGCTC ACGGTGATGG CAAGTGGAAG TGAAGTGCTG
CCAAGTGATC TTCCTTCCGA ATTATTATCA GAAAGGAAAG CCAGCCATTT TGATAATGAT
ATAAGTTGGC AGAAACAGTT AGAAACATGG GCAAAATCTG CACTGGCCTC CGGTGAAACC
GAGTTGCTTG CCTACGCACT CCCAGAATTT GAACGTATAC TTTTAGAAGC GGCACTTCAC
CACACCAATG GACATAAACA AGAAGCCGCC AAAGTATTGG GCTGGGGACG GAATACGCTA
ACACGTAAAC TCAAAGAGTT ATATTAA
|
|---|
| Protein sequence | MSMSRGYVWV VDDDSSIRWV MEKTLSSAHI KCETFADAES VLLALERETP DVLVSDIRMP
GMDGIALLNQ VHQRTPELPV IIMTAHSDLD AAVNAYQQGA FEYLPKPFDV DETLTLVERA
IAHGQEQRKT SHRPSENYSA PEIIGEAPAM QEVFRAIGRL SRSSISVLIN GESGTGKELV
AHALHRHSPR AQKPFIALNM AAIPKDLIES ELFGHEKGAF TGANTVRQGR FEQANGGTLF
LDEIGDMPLD IQTRLLRVLA DGQFYRVGGH VAIKVDVRIV AATHQNLEKL VHQGKFREDL
FHRLNVIRIH IPSLRERRQD IEKLTKHFLA LAAKELGVEM KTLNPRTVDI LTKLDWPGNV
RQLENMCRWL TVMASGSEVL PSDLPSELLS ERKASHFDND ISWQKQLETW AKSALASGET
ELLAYALPEF ERILLEAALH HTNGHKQEAA KVLGWGRNTL TRKLKELY
|
|---|
| |