Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2107 |
Symbol | |
ID | 5136854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2263755 |
End bp | 2264294 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640533563 |
Product | hypothetical protein |
Protein accession | YP_001218023 |
Protein GI | 147675161 |
COG category | [S] Function unknown |
COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
Num covering plasmid clones | 55 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCCGATCA TTCGGCTGAA CTTTATAACC AAGTACAAGG TAGATATGAA ACGCTCACAC CTTAGTCTTA TTGCTTGTTT GCTCGCCTCG ACTCAGGCTT ATGCACTCTC TACCGACAGA GAACAACCAG TTTATATCGA CTCAGACAGT CAACAACTGG ATATGAAGAG CAATCGTGTC ACCTTCTTAG GCGATGTCAA ACTCAAGCAA GGCAGCATCA ATATCAATGC CGACAAGTTG ATCGTGATCC GTAATGCTGA AAACGGCAAA ATTGAAGAAA TCGAAGGCTA TGGCAACGTC GCAACCTTCT CGCAACTGAC TGATGAAGGC AAAACCCTGT ATGGTGAAGC CAAAGAGCTG TACTACAAAG TTCGCGACGA TGAGTTAGTG ATGATCAATA AAGCCATGTT GTCACAAGAT GACAGCGAAA TTCGCGGCAG CAAAATCCGC TACAAAATCA GCTTGCAGAA ACTGATTGCC GATAGTGATG GCAAAGGGCG CGTCTCTACC GTTCTTCAAC CACAAGCAAT CCAAGAGTAA
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Protein sequence | MPIIRLNFIT KYKVDMKRSH LSLIACLLAS TQAYALSTDR EQPVYIDSDS QQLDMKSNRV TFLGDVKLKQ GSININADKL IVIRNAENGK IEEIEGYGNV ATFSQLTDEG KTLYGEAKEL YYKVRDDELV MINKAMLSQD DSEIRGSKIR YKISLQKLIA DSDGKGRVST VLQPQAIQE
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