| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1923 |
|---|
| Symbol | |
|---|
| ID | 5136544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2052491 |
|---|
| End bp | 2054830 |
|---|
| Gene Length | 2340 bp |
|---|
| Protein Length | 779 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640533380 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001217847 |
|---|
| Protein GI | 147673923 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.453342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGA CCGAAATTCT CTCTCTGGTT GAAAGGCTTA TACCCGTTTA TCGTTCCGGT
GACCTTGACT ACCTTTTGTC GCAAATGACC GAAGGGCACC CGCCTTCGGC CAAATTATTG
GTCAAAATGG AACTGAACCG CCTAATGGCA CCTTGTACAA AAAGCATTGA TTTACGTGGC
AAAGTTCAAG GAGAGTGTCG GGAATACCAT TTTGATGGCC GCCAACACTG GCTTGATGAT
GTGGCGTTCA ACTCTTACCA AAAAAGTCTC AAGAAATTTG GGGCTTATAC CGAAGGGGTG
TGGGAAGCGG TCAATAACAC CCGCAATAAT TTCCGAGTCA TGAAGCAACA AGGCAAACTC
GATCCGAAAA CAGATCAGCC GAAAGATACG AGTTTTGAAG TTGAGCCGGT CAAGCTTGGA
TACGACCTCA AACGCCAAGA AAACCGCTTA AAAATCTCCA GCCAGATCGA AATCCATCTG
AAGAACGAGC AATTAGTACA CGGTCTGAGT GTTGACCTCT CCCCTTCTGG GGCCAAATTA
AAAGTGCCAG CAGCATTTGA CTACAAATTG GGCGAGGTGA TTCAAGTCTA TTTTTCTGAC
TTAAATAAAA CCTCAAACGT GGTGGGACTG CATAAAAGTA TCGATTACCG GATTCTCGGC
GTCGATGAGT CCTATGACAG TGATGCGATT AAATTTCTGC GGGTATTGAA ACTCAGTGAT
ACCGATGTGA TTGAAAAAGT CATCGAGGAA GCGATTCAGA CTAATACGCA GAAAGCACGC
CACGACAACC AAGATAAGAT CATTCGTGCC CGTACTCGTG GCTATGAGCA CATGTACCTC
AAACACACCT GTAATCTACC GCTGTTTTTT AGTGGCAACG AACTCAAGCT GGCGTTACTC
ACCGAGAATA ACCGCCCCAT TTGGCAATAT TGGCACGATG AGCGTAACCA GCAAGCACTT
GGCACCTTAT TCAAACCAGA ACGCATGGCG CACTTAACCG CTCCGGGCGT TCGGGGCAGC
AATAATGTGT TGTACGCCTT TAAGCATGAG CACCAACACA AGACTTTGTT TTTCTCTATG
CTGATGCCAG AGGCGACTCA AGAACAGCGC AAGCTGTTTT GGCATATTGG CGCTAAACGC
GATAGCTGGA AAGCGTTTCG ACTGTTTGTG TTTGAACTCT CCGATGAAGA GCGAAAAACG
CTCGCCGAAC ACTCTCGTGA ATTAGCTGAC CAATCCCGTT CTCTCACTCA TTGCGGTGTA
CTGCAAGAGA TCAGTGATAC TGAAGCGGCA CACGACTATT TACTGGTTGA AAAACCCAAT
TTACCGAGCA GCACACTGAA TGACTTCCGC CACCCACGTC AGGTCGTCGG TACACCGATG
GGTATCTATT TTGATGCGCG CTCACGGCGC AAAGAGCCGC GTTATCGGTT TAGTACGCCA
GTACAAGTGA GCATAGATGC ACTCAAGGTC ACGGGAGCAA CGGTTGATCT CTCTAAGCGT
GGTCTCAGTT TGCTGTTAGA TACCCCACTG GATGTCAAAG CCAACGATCA AGTCTGGGTC
GATTACCTTG AGCTCAAGTT GTACGACAAA AGCCTTCCCT TAGACAAGGC CCCCTACAAA
GTGGTGCGTA TCGGTCCTGA AGGACGCCGT TTACAACTGG TTATTGAGGA GAATTTACAA
ACCCTCAAAA CCATTGCTTT CTTTAATAGC ATCATTGAAC ACAACCAAGA CAAACTATTG
ATTAAAGAAG AGATACTACC GAGCAATGCC CTACTCGAAA GTCTGCATAA TATTCTGCTC
GATAAGATGG TGAGTACGCC GTTTTTTGTT GAAAAGGTCG GGAGTAATCT TAAACCCAAA
GTGATTGGGG TGAACTACCC ACTCCCACCA CATCTGGCGC TGTTGGCCAA ATTGGGTAGT
GAGAATCGAA TTACTCTGCA ACCAATATTT AAGGGGCATA CCAACTCGTT ACTCGCAACG
CCAATGAAAC GGATTGAAGG CGCGGTACCG CAATACCATG AGGTGTATTT GAGTGCGGTG
AAATACGGAA CACGCATTCA ATCCGTGGAA TCACGTTTGT TGAGTGACTT TGCCGATACT
CGTGAACGCA TCCGTTTTAT CCGCCAAGGG CAAGCGATGG GCGAATTCTA CGCACTCAGG
GTGAGTGGTG TTCCGGTGTT TGCACCGATC ACGAATTTGC TACGCAGCGA TTTGACCGAG
CTGGCTGAGA TCAGCCCACA CCACGCCAAA AGTTTAGAAA AAGAGATGCT GGCACAAGTC
GGCTATGGTG AATTGGTCGA TATTACTGAG GAAGTGTTGA TCCGACTTGA GTTGACCTGA
|
|---|
| Protein sequence | MQQTEILSLV ERLIPVYRSG DLDYLLSQMT EGHPPSAKLL VKMELNRLMA PCTKSIDLRG
KVQGECREYH FDGRQHWLDD VAFNSYQKSL KKFGAYTEGV WEAVNNTRNN FRVMKQQGKL
DPKTDQPKDT SFEVEPVKLG YDLKRQENRL KISSQIEIHL KNEQLVHGLS VDLSPSGAKL
KVPAAFDYKL GEVIQVYFSD LNKTSNVVGL HKSIDYRILG VDESYDSDAI KFLRVLKLSD
TDVIEKVIEE AIQTNTQKAR HDNQDKIIRA RTRGYEHMYL KHTCNLPLFF SGNELKLALL
TENNRPIWQY WHDERNQQAL GTLFKPERMA HLTAPGVRGS NNVLYAFKHE HQHKTLFFSM
LMPEATQEQR KLFWHIGAKR DSWKAFRLFV FELSDEERKT LAEHSRELAD QSRSLTHCGV
LQEISDTEAA HDYLLVEKPN LPSSTLNDFR HPRQVVGTPM GIYFDARSRR KEPRYRFSTP
VQVSIDALKV TGATVDLSKR GLSLLLDTPL DVKANDQVWV DYLELKLYDK SLPLDKAPYK
VVRIGPEGRR LQLVIEENLQ TLKTIAFFNS IIEHNQDKLL IKEEILPSNA LLESLHNILL
DKMVSTPFFV EKVGSNLKPK VIGVNYPLPP HLALLAKLGS ENRITLQPIF KGHTNSLLAT
PMKRIEGAVP QYHEVYLSAV KYGTRIQSVE SRLLSDFADT RERIRFIRQG QAMGEFYALR
VSGVPVFAPI TNLLRSDLTE LAEISPHHAK SLEKEMLAQV GYGELVDITE EVLIRLELT
|
|---|
| |