| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1904 |
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| Symbol | recB |
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| ID | 5137456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2021977 |
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| End bp | 2025603 |
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| Gene Length | 3627 bp |
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| Protein Length | 1208 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640533361 |
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| Product | exodeoxyribonuclease V, 135 kDa subunit |
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| Protein accession | YP_001217828 |
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| Protein GI | 147674146 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGCCG ATTCAAATAA GCTCGCTGTT ACGCTCGATA CGTTGCGTTT TCCTTTGCAT
GGAGCGCGGC TGATTGAGGC CTCGGCAGGC ACCGGAAAAA CCTACACCAT TGCCGGACTC
TATCTGCGTC TGGTGCTTGG ACATGGCTGC GCGGAAACTC GTCACGCGCA TCCACTGAGT
GTGGATCAAA TTCTGGTGGT GACTTTTACC GAAGCGGCCA CTGCAGAGCT GCGTGACCGT
ATTCGTCGCC GCTTGCACGA TGCGCGCCTC GCTTTTGCTC GTGGCGCGAG TGACGATCCG
CTGCTTCGCT CCCTGCTGGC TGAATTTACC GATCACAACT TAGCCGTCTC TTTGTTGCTG
AGTGCCGAGC GGCAGATGGA TGAAGCAGCG ATTTTCACCA TCCACGGTTT TTGCCAACGG
ATGCTGACGC AAAATGCGTT TGAATCGGGC AGTCGCTTTG AAAATGAATT CGTCACTGAT
GAAAGTAGTC TCAAAGCTCA AGTGGTGGCC GATTATTGGC GCAGACAGTT CTACCCTTTG
CCCATTGCCC TCGCGAGCGA AGTGCGCCGC TTATGGCCTG CACCCTCTGC ACTGTTGGCT
GAGATTGCCG GTTATCTTTC TGGGCCGCCA GTCAAACTGA CCACACCTTT GATGGAAGGG
GATTTGGCCG CGCTGCAACA AGCGCAGATA GCGCGCATTA GCGAGATTAA GCAGCACTGG
TTAGCGGAGC GAGAGGAGAT TGAGCCCGCA GTAACTGGCT CTGACCTGCA CAAAAATAGC
CAAAATGCGC TGCTGCGCCG TTTGCCGATT CTGGATGCTT GGGCGCAAAG TGAAACGCAC
GATCTGCACG TGCCGTCAGA GCTTGAAGAG TTCACCCAAA GCGGGTTGCT TGCCAAATCA
AAGAAAGGCA ATCCGCCACA ATTAGCGCTG TTTGAACGAA TAGAAGCATT TCTTGCTGAG
CCTGTGTCAC TCAAAACACC GCTTTTGGTG CATGCGATTC ATCACTGTCG TCACTGGTTG
GCGAAAGCCA AATCCACCCA TCATTGGCTC TCGTTTGATG ACTTACTGAC TCAACTCAGC
GCTGCGCTCG ATAATGATGA GCAAGGGCTA TTGGGCGAGC GGATCCGCTC GCTTTATCCG
GTGGCGATGA TCGACGAATT CCAAGATACC GACCCGCTGC AGTACAGCAT TTTCAGTCGG
CTGTATCTGG ACCATCCGCA GTGTGGCTTG TTGATGATCG GCGACCCGAA ACAGGCGATT
TACGCCTTCC GTGGCGCCGA TATTTTCACT TACATCAAAG CGCGTAATCA GGTGAGCGCT
CACTACACCT TGGGTACGAA CTGGCGCTCC AGCGCGGCTA TGGTGGCGGC CGTGAATCAA
GTGTTTAGCT CCGCGACTCA TCCGTTTATT TACAGTGATG ACATTCCCTT TCAGCCCGTG
GCGGCAAGCC CTGGTACTGA TAAACGCCAT TGGTCACTGG AGGGGCAAGT ACAACCAGCC
TTGACCTATT GGTGGCCGGA AGATCTCGAT AAGCCGCAAA GCAAGACCGA TTACTACGCG
CAAATGGCTG AGGCGTGTGC GGCGCAAATC CAGCACATTT TGACTGCTTC GGCCTCTGGC
GCGGCGGCCT TTCACCGTGG CGAGGCGATT GAAGCGGGCG ATCTGGCGGT GCTAGTGCGT
ACCGGTAATG AAGCGCGTAT GGTGCGTGAT GCGCTCAGTC AGCAAGGCAT CGCCAGTGTT
TACCTTTCCA ACCGTGACAG CGTGTTTGCC AGTGATGTGG CGCAAGATAT TGAACGCTTG
CTGCTCGCCG TGTGGCAGCC AGAAGATGAA CGCTTGCTCC GTGCGGCCAT CGCCTCGAAT
CTGTTTGCGT TAACCGCCAG CGAGCTGGAT GCGCTGAATA ACGATGAAAA CGAATGGGAA
CAGTTAATTG CCGAATTTCG TCAATATCGC CGCTTGTGGA GCGAGCGCGG CGTATTGCCG
ATGCTGCGGG CGGTATTAAC TCAGCGCCAC ATCGCCGAGC GTTGGCTGAC GGAAAGTGAA
GGTGAGCGCT GGCTCACCGA TTATCTGCAC ATCAGCGAAC TCTTGCAGCA AGCGACGCGT
GAGATCGATA GCGATCAGGG CTTACTGCGT TTTCTGACTC AGGCGATGGC GGATGCTGCC
CAAGGATTGG GGGGCAGTGA TGAGCAGATC CAGCGTCTCG AATCTGAGCG GCGTCTGGTG
CAGATTGTCA CCATCCACAA ATCAAAAGGG CTTGAGTACC CGCTGGTGTT TTTGCCGTTT
GTGATGAGCT ATCGCGAGAG CAGTGAAGGC AAATATTACG ATACTGAATC GGCCACTACT
TGGGTCGATT TAACCGGCAA TGAAGAGGCG TTAGCCAAAG CCGATCAAGA ACGTTTGGCA
GAAGATTTAC GCTTGCTGTA TGTGGCGCTC ACTCGCGCAG TGTATGGCTG TTTTATTGGG
ATTGCGCCGC TGCGCAACGG CAATTCGAGC CAAGAGCCGA CCTCGGCGCA TCGCAGTGCG
ATGGGGTTTC TGCTGCAAGA TGGTCAAGAA GGTGGTATCG CGGATCTGCA GCAAGCGCTG
CTTAAACAGT GTGAAAACTT GCCAGATGTC GTGCAATGCC CGCCACCGAA GCGTTTCGAA
CAAGCGTATC AGCCACCCCA ATTGGACGAG CGAGAGCTGA CTGCCCGTGA GTTAAGCCAA
GCGATTGATC GCCGTTGGCG AGTGACCAGT TACTCAGGCT TGGTGATGCA ATCAAGTCAT
GCTCGCCATG ATCCTTTGCA AGAGTTGCCC TTGCTTGAAG TAGGCGGTTT TGATCTTGAT
AGTGCGCAAG AGCGTGATGG AGCGGCGCTG GAATCTGTCG AGCGTTCGAT TTTCAATTTC
CCGCGTGGCG CACGCCCCGG CACTTTCTTG CATTCGCTGT TTGAAGAGGT GGATTTCCAG
CAATCGGCAC ACAGTGAACC CAATACTAAA ATCATCCTTG ATTTGATGGA AAGTGAGCAG
ATTGAAAGCG AGTGGCTGCC GGTGTTGCAA CACTTGGTTG ACACCGTATT GAGCACGCCA
CTGGATGGTA AAGCGCTGCG CTTACAACAA ATTATGGCCG CCCAGCGTCT GACCGAGTTG
GAGTTTTTAT TGCCGATCGA AGTGTTGGAT GCGCCAACCC TGAATCGCAT CACCCAGCGT
CACGATCCGC TTTCGGCACA GGCGGGCGAT CTCGGTTTTC ATGCGGTGCA AGGCATGCTC
AAAGGCTTTA TCGATCTGGT GTTTCAATAT CAAGGGCGCT ATTACGTGCT GGACTGGAAA
TCCAACCATT TAGGTGACGA TCCTGCGGCG TATCATCCAC AGCGTTTGAG CGGTGCGATG
GCCGATCACC GTTACGATCT GCAATACCAG ATTTACGCGT TAGCGCTGCA TCGCTTTTTG
CGCAGCCGTT TAGCCCATTA CAATTACGAG CAGCATTTCG GCGGCGTGTT TTATCTCTTC
TTACGCGGGA TGGATGGCCG CACCGATCAA GGCGTGTTCC ATACCAAGCC AAGCTTGGCC
TTGTTAGATG AGTTGGATGG ATTGATTGCA GGGCGCGAGC TGGCACAAAG AGCGAGTAAA
GCTGGGCAGA TGGAGCTTGA TTTATGA
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| Protein sequence | MSADSNKLAV TLDTLRFPLH GARLIEASAG TGKTYTIAGL YLRLVLGHGC AETRHAHPLS
VDQILVVTFT EAATAELRDR IRRRLHDARL AFARGASDDP LLRSLLAEFT DHNLAVSLLL
SAERQMDEAA IFTIHGFCQR MLTQNAFESG SRFENEFVTD ESSLKAQVVA DYWRRQFYPL
PIALASEVRR LWPAPSALLA EIAGYLSGPP VKLTTPLMEG DLAALQQAQI ARISEIKQHW
LAEREEIEPA VTGSDLHKNS QNALLRRLPI LDAWAQSETH DLHVPSELEE FTQSGLLAKS
KKGNPPQLAL FERIEAFLAE PVSLKTPLLV HAIHHCRHWL AKAKSTHHWL SFDDLLTQLS
AALDNDEQGL LGERIRSLYP VAMIDEFQDT DPLQYSIFSR LYLDHPQCGL LMIGDPKQAI
YAFRGADIFT YIKARNQVSA HYTLGTNWRS SAAMVAAVNQ VFSSATHPFI YSDDIPFQPV
AASPGTDKRH WSLEGQVQPA LTYWWPEDLD KPQSKTDYYA QMAEACAAQI QHILTASASG
AAAFHRGEAI EAGDLAVLVR TGNEARMVRD ALSQQGIASV YLSNRDSVFA SDVAQDIERL
LLAVWQPEDE RLLRAAIASN LFALTASELD ALNNDENEWE QLIAEFRQYR RLWSERGVLP
MLRAVLTQRH IAERWLTESE GERWLTDYLH ISELLQQATR EIDSDQGLLR FLTQAMADAA
QGLGGSDEQI QRLESERRLV QIVTIHKSKG LEYPLVFLPF VMSYRESSEG KYYDTESATT
WVDLTGNEEA LAKADQERLA EDLRLLYVAL TRAVYGCFIG IAPLRNGNSS QEPTSAHRSA
MGFLLQDGQE GGIADLQQAL LKQCENLPDV VQCPPPKRFE QAYQPPQLDE RELTARELSQ
AIDRRWRVTS YSGLVMQSSH ARHDPLQELP LLEVGGFDLD SAQERDGAAL ESVERSIFNF
PRGARPGTFL HSLFEEVDFQ QSAHSEPNTK IILDLMESEQ IESEWLPVLQ HLVDTVLSTP
LDGKALRLQQ IMAAQRLTEL EFLLPIEVLD APTLNRITQR HDPLSAQAGD LGFHAVQGML
KGFIDLVFQY QGRYYVLDWK SNHLGDDPAA YHPQRLSGAM ADHRYDLQYQ IYALALHRFL
RSRLAHYNYE QHFGGVFYLF LRGMDGRTDQ GVFHTKPSLA LLDELDGLIA GRELAQRASK
AGQMELDL
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