Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A1890 |
Symbol | |
ID | 5136828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2008917 |
End bp | 2009597 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640533347 |
Product | putative transcriptional activator |
Protein accession | YP_001217814 |
Protein GI | 147675664 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3806] Anti-sigma factor |
TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTATC ACCCTAATTA TGCTTTACTC GCAGCCTATG CTGAGGGCGG TCTTGATTCT GCGCATGGTT TGGCGATTTC TGCTCATTTG GAAATCTGCC CACATTGTCG TGACTTGGTG CATGAGATTG AGGCAGAACT TGGTGAGTTA CTCAATCAGC AAGCGGCCTC TTCTGTCGCC TTGTCAGACG ATGCCAACTG GCAAGCGATG TTCGATTCGA TTGTGGCCTT GCCGCAGCAA GCGGCATCGA ACACTCCCGT TAAAACCACA CCGGTAATGG TGACGGTAAA CGGTAAGCAG ATTGCGATTC CCAAAGTCTT AGCGCGTTTG GTTAAACCTG AGCAGCAGTG GCGCAGCTAC GGTGGCAAAG TGTTCAGTTT ACCTTTGCAG TCGGAAGATA ATGTACGGAT GAATCTGATG TACATCAGCC AAGGGGTTTC TATTCCTCAG CACACCCATA AAGGGTTTGA GTCGACCTTG GTGTTGCACG GTGGTTTTAG TGATGAAAAT GGTCATTACG ATGTGGGTGA TTTTATGCAG CATGATGGTC AAATCTGCCA TTCGCCAAGC ACACCGCAAG ATCAAGACTG CCTTTGCTTA ACCGTATTGA CTGAGCCTAT GGTCTTTACC CAAGGGGTAG CGCGGATCTT TAACCTGTTT GGCAAGGGAC TTTACCCGTA A
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Protein sequence | MSYHPNYALL AAYAEGGLDS AHGLAISAHL EICPHCRDLV HEIEAELGEL LNQQAASSVA LSDDANWQAM FDSIVALPQQ AASNTPVKTT PVMVTVNGKQ IAIPKVLARL VKPEQQWRSY GGKVFSLPLQ SEDNVRMNLM YISQGVSIPQ HTHKGFESTL VLHGGFSDEN GHYDVGDFMQ HDGQICHSPS TPQDQDCLCL TVLTEPMVFT QGVARIFNLF GKGLYP
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