| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1822 |
|---|
| Symbol | gmhA |
|---|
| ID | 5136951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1936615 |
|---|
| End bp | 1937190 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640533279 |
|---|
| Product | phosphoheptose isomerase |
|---|
| Protein accession | YP_001217746 |
|---|
| Protein GI | 147673432 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0279] Phosphoheptose isomerase |
|---|
| TIGRFAM ID | [TIGR00441] phosphoheptose isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACCAGG ATTTAATTAG AAGTGAACTG ACCGAAGCGG CAGACGTTTT GCAGAAATTT
TTGAGTGATG ACCACAACAT CGCACAAATT GAAGCGGCGG CTAAGCTGAT TGCTGATTCG
TTCAAGCAAG GTGGGAAAGT GCTTTCTTGC GGTAATGGTG GTTCGCATTG TGATGCCATG
CACTTTGCTG AAGAGTTGAC TGGGCGTTAC CGTGAAAACC GCCCTGGTTA TCCTGGTATT
GCGATTTCTG ATCCAAGCCA TCTGTCTTGT GTGAGTAACG ATTTTGGCTA TGACTATGTT
TTCTCTCGTT ATGTGGAAGC GGTCGGAGCG AAAGGCGATG TTCTGTTTGG TCTGTCTACC
TCTGGTAATT CAGGTAATAT CCTAAAAGCC ATTGAGGCGG CGAAAGCAAA AGGCATGAAA
ACCATCGCGT TAACCGGCAA AGATGGCGGC AAAATGGCGG GTTTAGCCGA TGTTGAAATT
CGTGTGCCAC ATTTTGGTTA CGCGGATCGT ATCCAAGAAG TGCACATTAA GATCATCCAC
ATCATCATTC AGTTGATTGA AAAGGAAATG GCGTAA
|
|---|
| Protein sequence | MYQDLIRSEL TEAADVLQKF LSDDHNIAQI EAAAKLIADS FKQGGKVLSC GNGGSHCDAM
HFAEELTGRY RENRPGYPGI AISDPSHLSC VSNDFGYDYV FSRYVEAVGA KGDVLFGLST
SGNSGNILKA IEAAKAKGMK TIALTGKDGG KMAGLADVEI RVPHFGYADR IQEVHIKIIH
IIIQLIEKEM A
|
|---|
| |