Gene VC0395_A1302 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1302 
Symbol 
ID5137104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp1384772 
End bp1385419 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content48% 
IMG OID640532760 
Producthypothetical protein 
Protein accessionYP_001217246 
Protein GI147674691 
COG category[S] Function unknown 
COG ID[COG1434] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.0955164 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAAC GCTTGTATCA ACAGATTGAA ACCCTTTGGG ATTACTTGCA ATTGCACCAA 
CAACCCGACG TTGCGGATCT GATTTTGGTG CTCGGCAGTA ACGATGTCCG CGTGGCAGAA 
CATGCGGCAA AACTCTACCA CCAAGGCCTT GCCCCTTATG TACTGTTTTC CGGTGGCTTT 
GGCCGTTTTA CTCAAGGGGT ATTTAACCAC AGTGAGGCGG AGACTTTTGC TGCGATCGCC 
AAAGATGCAA GTGTCCCTGA ACACGCGATT TTGCTTGAGA CACAATCGAC CAATAGTGGT 
GAAAATCTAC ATTTCAGCCA TCAGCTACTG GTGCAACAAG CTTGGCCTGC CAAACGCATC 
TTACTGGTGC AAAAACCTTA TATGGAACGT CGCGCTTATG CGACATTTAT GCAACAGTGG 
CCAGAATCGG TCGAAAGTGT GCAGGTCAGC TCACCCGCAG GCAGTTTTTT TGACTATTTA 
ACTTCAGAGC TCACCAGTGA TTTTGTGCTC AATGCCATGC TGGGCGATTT TGAACGCATC 
CGAGATTATC CAGCGCTGGG TTTTCAAATC ACACAACCTA TCCCAGAGCC AGTGATGCAG 
GCCTATCAAG CCTTGTTGCC ATTAAAAGTG AATCTTGAAA TGTCATGA
 
Protein sequence
MSKRLYQQIE TLWDYLQLHQ QPDVADLILV LGSNDVRVAE HAAKLYHQGL APYVLFSGGF 
GRFTQGVFNH SEAETFAAIA KDASVPEHAI LLETQSTNSG ENLHFSHQLL VQQAWPAKRI 
LLVQKPYMER RAYATFMQQW PESVESVQVS SPAGSFFDYL TSELTSDFVL NAMLGDFERI 
RDYPALGFQI TQPIPEPVMQ AYQALLPLKV NLEMS