| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1195 |
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| Symbol | |
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| ID | 5137511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1258267 |
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| End bp | 1259556 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640532653 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001217141 |
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| Protein GI | 147675021 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGACA CAGATAACCG CTGGAGAATT GCGCTTCGCT CTATACGAGG AGAACTGATC
ATTATCGGGA TGATAGCGGT CAGCATAGTA TTGATTAACA CGCCTAAATT ATTGTTTGAA
GATAAGATCC ACGCTTATGA AAAAGAGCAA TTGCAACTGA CTGTCGAACT ACAGAAAACC
CGTATTGACT ACGCAAGCCT AATTCTAGAA CATCTAGAAA CCCACTCATT GACTCCACAG
TTGCAAGAAT TCTTCAATCT GTACCATGGC AATTTATGTG TGCTGGATGA GAATTCCCCA
CAACAATGCC CGTTGAGCAT TATCGATGCG GTTCAATCCA CCACTTCAGC AAGTGATTTT
GTCGCTTCTA CCTCAGTAAA CATCACGTTT GCAGAAGGTT CTATCCTATT TTTTCAAGTG
CAAGGCAAAC AGATCCGAGT GCTATGGTTC AACCATGCTT CATTTTGGCC AGCACCACAG
AAAAACATCA GCTTGGTCTT GGTTCGCGGT AATCACATTC AGTTCTTAGA TAATCCGATT
GCACACTATA ACGCTCTACT GAATTACACG ATTTTGCGCC ACCGAGATGA TTACGGGACT
TTGCAGTTTG AAAACATGGA GTTGAGCTTT CTTCGTTGGA ACCTTGGTGA ATATCAATTG
ATCAGTGTGT TTAACGACAA AGTACGCTTG TTTAATCTTA TTTACTGGGT AATGTCGGCC
AGTTTAACCC TGTTACTGAC TTTGACTTGG TTCCTCACTC GACTCAATCT ACAAAAAGTA
GCGGCGCAGC GTCATGTTTA TATCGACAAC TTAACTCGGC TCAATAACCG ACATTTTCTG
AATAAAATCA GTACTAAGTT TATTGAACAC CCTCACTCCA TTGCCGCGAT GATCGACATC
GATCACTTTA AGAAAATTAA TGACCAATAT GGGCACATTA CCGGAGATCG CATTCTACAG
GCGGTGGCCT CTTGTCTGCG CAAAAATGTC CGAGATGGAG ACACCATTAT CCGCTTTGGT
GGAGAAGAGT TTTTACTATT GTTCCAAGCC CATTCAAACA AAGAAGCTTG GTACATGCTC
GACCGATTGC GTCAGCGAGT TAAAGACGAT CATAGCTTGT ACGGAACAAC GATTTCGATT
GGTTTTACTT TTATCGATGG TAGTTTACCC GCTGCTATTT CGCGGGCAGA TACTGCACTC
TATCAAGCAA AAGAAGCAGG ACGTAATCAA GTGGTTGCCG ACAGCGAGAA AGAGAATGAC
TCAGCAGCAG ATTTACCGAT TCAGTGCTGA
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| Protein sequence | MMDTDNRWRI ALRSIRGELI IIGMIAVSIV LINTPKLLFE DKIHAYEKEQ LQLTVELQKT
RIDYASLILE HLETHSLTPQ LQEFFNLYHG NLCVLDENSP QQCPLSIIDA VQSTTSASDF
VASTSVNITF AEGSILFFQV QGKQIRVLWF NHASFWPAPQ KNISLVLVRG NHIQFLDNPI
AHYNALLNYT ILRHRDDYGT LQFENMELSF LRWNLGEYQL ISVFNDKVRL FNLIYWVMSA
SLTLLLTLTW FLTRLNLQKV AAQRHVYIDN LTRLNNRHFL NKISTKFIEH PHSIAAMIDI
DHFKKINDQY GHITGDRILQ AVASCLRKNV RDGDTIIRFG GEEFLLLFQA HSNKEAWYML
DRLRQRVKDD HSLYGTTISI GFTFIDGSLP AAISRADTAL YQAKEAGRNQ VVADSEKEND
SAADLPIQC
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