| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1056 |
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| Symbol | |
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| ID | 5135572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1101640 |
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| End bp | 1103799 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532514 |
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| Product | putative toxin secretion transporter |
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| Protein accession | YP_001217002 |
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| Protein GI | 147675517 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCC GTTTTACAAC CGACGCTCAT AGGCTTGCTG AACAAACGTT ACCACAAGAG
TCTCCAAGAA CTAATTGGGG TATCGAAGCT GTGGTCTACG CAGGTCAGCA ATTTCACAAA
AAATCGACCA GCTCGCAACT GAAACACGCG CTAGGGGTAA GCTACGCCAA TCTCACTGAC
ATGGAAATGA GAGAGGCCGC CGACTATCTT GGCCTGAAAA GCCAAATAAC AAAGCTTAGT
ATTCAAGCGT TCAATACGCT GCCACTCCCC GCTCTTATCG AATATCAGGG TGGCTGGAAA
GTGATGATTC AAACCGATGA TAACGGTTGG ACGGCCTACG ATCCTGCAAC CGACTCTCTG
CACACACTCT CGTTCACATC GGCTGAATCC ACCGCGCATT ACAAAGTCAT GCTGATTGCG
GATGAGTCTC TGAGCGTCAA AGAGGTCAAA TTTGGTTTAA GCTGGTTCGC CCCTTCCATT
CTTCGCCAAA AAAACCAACT GCGAGATGTG TTTCTTTACG CCATCGCGCT ACAGATATTT
GCGCTGGTTA GCCCGATGCT GTTTGAAAAT GTTATCGATA AAGTGCTCGT GGGACGAAGC
CTATCAAGCT TGCATGTGCT GGCGCTGGCG ATGTTAGCGT TAGCTGAGCC AGCATACAGC
TATTTACGCA ATACCGTATT TGGCCATCTT GCAAGCCAAG TGAATGCAGA GCTGTCAGGC
CGACTCTATC GGCACTTAGT CGGTCTGCCA TTAACCTATT TCAAGCAGCG CCAAACTGGG
CAAATCATTG CGCGAGTGCG TGAAATGGCG CAAATCCGTC AGTTTCTGAC GGGTTCAACT
TTGATGCTAT TACTTGATCT GATTTTTGTG ACGGTTTTTC TCGCTGTCAT GTTCCATTAC
GCCAGTACAC TGACTTGGTT AGTGATTGGC TCGCTTGTGA TTTATTTTGT GTTGTGGCTG
ATTGCAGGAC CGCTGATCCG CAAAAAAGTG GAATCTGAAT ACGAGTCCGA CGCTAATGCC
ACGACGTTTT TGACCGAAGC CGTTACTGGT ATTGAAACCA TCAAAACGAC CGCGACGGAG
CATCGCTTTC TTGAGCAGTG GCAACGTATT CTTAGCCAGC AACTAAACCG TAGCTTTGAT
GCACAAAAAT CGGGGCTCAT CGCTGGGCAA GCTATCGCTC TGGTGCAGAA GCTGACTGCG
GCACTGCTGC TTTGGTGGGG CGTGAGCGCG GTACTCAAAG GTGAAATCAC TCCCGGTCAG
CTAGTGGCCT TCAATATGCT CGCAGGCCAT GTGACTCAGC CCGTTCTGCG ACTGGCACAA
ATTTGGCAGG ATTTTCAGCA CACTCTTATC GCACTGAGAA GGGTTGGCGA TATTCTCGAT
GAACCGAGAG AAAACAGTAA ACAAGGCTTA GCGTCCGTGC CCGAACTCGA CGGTGGCATT
GAGTTTAGTA ACATTCGCTT TCGTTACCAC CAAGATGCCC CTGAGGTACT GGCCAATCTA
TCACTCAAGA TCAAACCGGG GCAATTTATC GGCGTTACTG GACCATCAGG TTCAGGCAAA
AGCACACTCA CTCGCCTGTT GCAACGCTTG TACGTTCCGC AACATGGCCA AGTGCTGGTG
GATGGAATGG ATCTTGCGAT TGCGGATCCC GTGTCTCTGC GCCGCAATAT GAGTGTGGTA
CTACAAGAGA GCATTCTTTT TTCCGGAAGT GTGGCGGACA ATATTCGTTT ATGTAAACCG
CAGGCCAGCG ATGAAGAAAT CCGTCATGCC GCTCAATTAG CAGGTGCGTT AGCATTTATT
GAAGGACTTC CCCACGGCTT TAACCAACCG GTTGGGGAAA AAGGTGCAGC GCTTTCGGGA
GGTCAAAGGC AACGTATCGC CTTAGCGAGA GCCTTGCTGG TCAATCCTAG AATCTTACTG
CTGGATGAAG CGACCTCTGC TCTCGACTAC AATTCTGAAG CGTCAATCAT GAGCAATATG
GATGAAATAT GTCGTGGTCG CACTGTGATC AGTATTGCCC ATCGCCTCAA TACCATCCGC
CATGCTGACA ACATCTTTGT CTTGGATAAA GGACAAGTCG CCGAAAGCGG TACACATGAA
GAACTGCTTG CCCAGCAAGG GCTGTACGCC AAACTTTGGA CGCAACAAGT GGGAGAATAG
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| Protein sequence | MNTRFTTDAH RLAEQTLPQE SPRTNWGIEA VVYAGQQFHK KSTSSQLKHA LGVSYANLTD
MEMREAADYL GLKSQITKLS IQAFNTLPLP ALIEYQGGWK VMIQTDDNGW TAYDPATDSL
HTLSFTSAES TAHYKVMLIA DESLSVKEVK FGLSWFAPSI LRQKNQLRDV FLYAIALQIF
ALVSPMLFEN VIDKVLVGRS LSSLHVLALA MLALAEPAYS YLRNTVFGHL ASQVNAELSG
RLYRHLVGLP LTYFKQRQTG QIIARVREMA QIRQFLTGST LMLLLDLIFV TVFLAVMFHY
ASTLTWLVIG SLVIYFVLWL IAGPLIRKKV ESEYESDANA TTFLTEAVTG IETIKTTATE
HRFLEQWQRI LSQQLNRSFD AQKSGLIAGQ AIALVQKLTA ALLLWWGVSA VLKGEITPGQ
LVAFNMLAGH VTQPVLRLAQ IWQDFQHTLI ALRRVGDILD EPRENSKQGL ASVPELDGGI
EFSNIRFRYH QDAPEVLANL SLKIKPGQFI GVTGPSGSGK STLTRLLQRL YVPQHGQVLV
DGMDLAIADP VSLRRNMSVV LQESILFSGS VADNIRLCKP QASDEEIRHA AQLAGALAFI
EGLPHGFNQP VGEKGAALSG GQRQRIALAR ALLVNPRILL LDEATSALDY NSEASIMSNM
DEICRGRTVI SIAHRLNTIR HADNIFVLDK GQVAESGTHE ELLAQQGLYA KLWTQQVGE
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