| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0985 |
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| Symbol | |
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| ID | 5135531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1020657 |
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| End bp | 1021835 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640532443 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001216931 |
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| Protein GI | 147673521 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCATTCAG GACGACCAAG CATGATGGAT CTTTCTTTTT TAGAAATTGC CACAGTGATA
AATAACATCG CATGCAGTGC AATAGCCGCG CTCTTTCTTT ATATGTTAAG AAGCAAGCTG
ATTGAACATA AATTGGATAC GGCCACTTGG TTTGTGCTGC TGTTTTTGGC TTACGGCTTG
GCTTATACCA CCTCTTCGCT GCGTTTTATT TTACCGATGG GATTTGCCAT CTTTGTCAAT
AACTTGCTCT ATCAACTTGG CGGTTATTGC ATGCTATTTG CCGTATTGCG CTGGTATCAA
AAGCCGATCA AAAGTGGCTT ATACCTACTG ATGATGGCGC ACTCCTTGTT GTTTGCTTTG
TTGTTATATC TCTTGTTCCG TTTGAATCCT GAAGACATAG GACTGCGCAT CTTGATTGCT
TCGTTAAGCT TGTCTTCGGT GTATCTGATT TCTGCAATCG TTGCGGCAAA AAATGGTCAG
CGTGGGCGGC CAGAGCAAAC TCTTTTCGCT GTTGTATTGG CAATGATGAT GGTCATGCTC
TACGTTCCTT TCGTCGCTTA TCAAACTTTA CCTTTGTTGG CGGTATTTCG CGCCTCGACC
ATAGTGGTGC AGAACCTGTT CTTTTTTATC ATTCTTGGCA CCATGCTAAT GCTGTTTTTG
TTCGAGGAAA TAGAATGGCA TCGCTTACGC TCTATTCAAG ATGAACTGAC AGGCGCGTTT
AACCGTCGTC ATTTTAAAGA GCAAGTACAG CAAAAATTGA AGCAGTCTAA GCAGAAATCT
ATGGTGGCTT TAGTCGATAT TGACCATTTC AAGCAGATCA ATGATTCCTA TGGACATGAT
ATTGGTGATT CAGTGATCAC TTATGTGGTT CGCCATTTAG AGTCACTGGC ATTAACGGAA
TGCTTGGTCG CTCGATATGG CGGTGAAGAG TTCGCGATCT TTGCCCGTGA AAATGATTTT
GAGCGAGTAT CGCAAGCTCT TGATTCGGTA CGTGATGCGA TTTCGGTAGG TTTTCATGTT
GAACAGCAAC CACTCAAAGT ATCGGTCAGT ATCGGCGCGG TGATTTTCGA AAGTTCACAT
GAATATGGCG AAGTATTACG CCAAGCGGAT AAGGCGTTAT ACCAAGCGAA GCAACAAGGA
CGAAACCGAA TCATGCTGCA AGACGTGAGC GCGAGTTAA
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| Protein sequence | MHSGRPSMMD LSFLEIATVI NNIACSAIAA LFLYMLRSKL IEHKLDTATW FVLLFLAYGL
AYTTSSLRFI LPMGFAIFVN NLLYQLGGYC MLFAVLRWYQ KPIKSGLYLL MMAHSLLFAL
LLYLLFRLNP EDIGLRILIA SLSLSSVYLI SAIVAAKNGQ RGRPEQTLFA VVLAMMMVML
YVPFVAYQTL PLLAVFRAST IVVQNLFFFI ILGTMLMLFL FEEIEWHRLR SIQDELTGAF
NRRHFKEQVQ QKLKQSKQKS MVALVDIDHF KQINDSYGHD IGDSVITYVV RHLESLALTE
CLVARYGGEE FAIFARENDF ERVSQALDSV RDAISVGFHV EQQPLKVSVS IGAVIFESSH
EYGEVLRQAD KALYQAKQQG RNRIMLQDVS AS
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