Gene VC0395_A0626 details

Gene Information

• Locus tag: VC0395_A0626
• Symbol: lolA
• ID: 5135139
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 667793
• End bp: 668389
• Gene Length: 597 bp
• Protein Length: 198 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640532084
• Product: outer-membrane lipoprotein carrier protein
• Protein accession: YP_001216576
• Protein GI: 147675332
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2834] Outer membrane lipoprotein-sorting protein
• TIGRFAM ID: [TIGR00547] periplasmic chaperone LolA

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.0165352
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAAAT GGTTAGCCCT GTTATTTTGT AGTTTCTCGG CCATTGCCGC CCCTAAAGAT 
ACCTTAAGTG AGCGTTTAGC CATGAGTGAA GGCTTCAGCG CGACCTTTAA TCAGCAAGTA 
TTAAGCCCAG AGGGCAAAGT GATCCTGACC GGAAATGGCA AGGTGGATAT TGCTCGTCCG 
AGCCTATTTC GTTGGGAAAC CGAAACGCCA GATGAAAACT TACTGGTCTC TGACGGTACA 
ACCTTATGGC ATTTCGATCC TTTCGTGGAG CAGGTCACCT TGTACCGCGC CGAAGAAGCC 
TTAGAGCAGA CGCCTTTTGT GCTGCTGACT CGTAATAAAG CCAGCGATTG GGATGCGTAC 
CATGTGGAAG AAAAGGGTGA TGTATTTACC CTGACGCCTA CCGCGCTGGA TTCAAACCAA 
GGCCGTTTCC AAATCACCAT CAGTGAGAAA GGGGTGGTGC AAGGTTTTAA AGTGATTGAG 
CAAGATGGTC AGCAGAGCGA ATTTACCTTT AGTAAGGTGA AACAGCAGAA ACCAAACGCT 
AGCGTATTTA ACTACAAAGT GCCGAAAGGC GTGGAAGTTG ACGATCAGCG TAACTAA 

 

Protein sequence

MNKWLALLFC SFSAIAAPKD TLSERLAMSE GFSATFNQQV LSPEGKVILT GNGKVDIARP 
SLFRWETETP DENLLVSDGT TLWHFDPFVE QVTLYRAEEA LEQTPFVLLT RNKASDWDAY 
HVEEKGDVFT LTPTALDSNQ GRFQITISEK GVVQGFKVIE QDGQQSEFTF SKVKQQKPNA 
SVFNYKVPKG VEVDDQRN