| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0536 |
|---|
| Symbol | |
|---|
| ID | 5137248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 574143 |
|---|
| End bp | 576464 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640531994 |
|---|
| Product | electron transport complex protein RnfC |
|---|
| Protein accession | YP_001216487 |
|---|
| Protein GI | 147674223 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
|---|
| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000392819 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTCAT TAATCGAACA AATCAAATCA GGTAAGCTTT GGGACTTCCC CGGCGGCATT
CATCCGTTTG AAAATAAACA CCAATCCAAC CGTCAGCCGA TTATCAATGC GAGCATTCCG
AATGAGCTGG TACTGCCACT CAAGCAGCAC ATTGGTAAGG CCGGCGATCT ACTGGTGAAA
GTGGGCGATC GCGTTTTAAA AGGCCAGCCG CTGACGCAAT ATACGTCGAC CTTCATGTTG
CCGATTCATG CACCAACTTC AGGCGTTATT AGCGCTATTG AGCCACGTAC CGTCGCTCAC
CCTTCCGGTT TGAGTGAGCT GTGTATCGTA CTAACGCCAG ACCAACAAGA AGAGTGGTTT
GAGTTGCAGC CGCAGCCGGA TTTTCAGCAG TTGACCCCTG AAACACTGTT GGAGCTGATC
CGTCAGGCCG GTATCTCAGG TATGGGTGGC GCAGGTTTCC CAACTGCGAA GAAACTGCAA
TCTGGGCTTT CGCGCACCGA AATCTTGATC ATTAACGCCG CCGAGTGTGA GCCTTATATC
ACCGCAGATG ATGTGTTAAT GCGTCAATAT GCCCATGAAA TTATTCAGGG AATCGAGATT
GTTGAGCACA TTCTAAAGCC TAAACTCACC ATCATCGGGA TTGAAGATAA CAAACCGGAA
GCCGTTGCAG CGCTGCAGCA AGCCGCGCAA GACAAACCGA TGGTGATCCG CGTTATCCCA
ACCAAATACC CGTCTGGTGG TGAGAAACAA CTCATCAAAA TCCTGACTAA CTTGGAAGTT
CCGAAAGGTG GTATTCCTGC CGATATCGGT TTAATGGTGC AAAATGTCGG CTCATTGCAG
GCGATTGCGC GCGCGATTGT ACATGGTGAA CCTCTGATCC GCCGTGTAGT GACACTCACC
GGCGATTGTT TCCGTAAACC ACGTAACGTT TGGGCATTGC TCGGCACGCC TGTCCAAGCG
CTGCTCAATG AGTTTGGCTA CAAAGCCGAT AAAAAGCTGC CGCGTCTCAT CATGGGCGGC
CCGATGATGG GCTTCACTCT ACCCCATGCG CAAGTGCCGA TCACTAAAAC CGCTAACTGT
ATTCTTGCGC CTACACGCAA TGAGTTAACC AGTAGTGATA ATGAGATGGC GTGTATCCGC
TGCGGTCAAT GCGCCGAAGC CTGTCCGGTA TCGCTATTAC CACAGCAGTT ACAGTGGCAC
GCGAAAGCCG AAGAATTTGA TAAGTGCGAA GAGCTCGATC TAAAAGACTG TATTGAATGC
GGCGCTTGTG CTTATGTCTG CCCGAGTGAA ATTCCGTTGG TGCAGTACTA TCGCCAAGCC
AAAGCAGAAA TTCGTACCCG CAGCTTAGAA GCGGAAGCCG CTGAACGAGC AAAAGCACGC
TTCGAAGAGA AAAAAGCGCG CATGGAGCGG GATAAAGCGG AGCGTGAAAA TCGCTTCAAG
CAAGCGGCGG AAGATCGCCG CAAAGAGATG CAGCAGCAAG GTGGCTCCGA TGCGATTGCG
GCGGCCATTG AACGGGTTAA AGCCCAAAAA GCTCAGCTCG AGCCAACCGA TAACAGCGTA
AAACCGGCTA TTGCGGCTGC GATTGCACGC GCTAAAGCCA AACAGGCAGA AGCAGCGCAA
AGTGGTGCCA GTGAGCCTGA TAATAGTGAA ATGGCTAAAC TACGTGAAGA GCGTAAACGC
CAAGCTCGGG AACGCAAGGC ACAAAAAGGT GAAGTGACTG AAGCATCAAC CAGTGATGGT
GCGGACGATA AGAAATCGGC TGTCGCTGCA GCGATTGCTC GCGCCAAAGC GCGTAAAGCG
GAGCAGCAGG AAACCGAAAG CGCAGCTCAG CCAGCACAAG CCACACCAAG CAGTGACGAT
GCTGATCCGA AAAAAGCTGC GGTCGCCGCC GCCATTGCTC GCGCCAAAGC GCGTAAAGCA
GAGCAGGGAA CCGAAAGCAC AGCTCAGCCA GCACAAGCCA CGCCAAGCAG TGACGAGGCT
GATCCGAAAA AAGCTGCGGT CGCTGCCGCT ATTGCTCGCG CTAAAGCGCG TAAAGCAGAG
CAGCAGGAAA CCGAAAGCAC AGCTCAGCCA GCTCAAGCCA CGCCAAGCAG TGACGACGCT
GACCCGAAAA AAGCTGCGGT CGCTGCCGCT ATTGCTCGCG CTAAAGCGCG TAAAGCAGAG
CAGCAGGAAA CCAAAAGTAC AGCTCAGCCA GAACAAGCCA CGCCAAGCAG TGACGACGCT
GACCCGAAAA AAGCTGCGGT GGCCGCCGCG ATTGCTCGCG CCAAAGCACG GAAAGCCGCC
CAACAATCAT CATCTAATTT AAACGCTGAG GAGAAAGACT AG
|
|---|
| Protein sequence | MLSLIEQIKS GKLWDFPGGI HPFENKHQSN RQPIINASIP NELVLPLKQH IGKAGDLLVK
VGDRVLKGQP LTQYTSTFML PIHAPTSGVI SAIEPRTVAH PSGLSELCIV LTPDQQEEWF
ELQPQPDFQQ LTPETLLELI RQAGISGMGG AGFPTAKKLQ SGLSRTEILI INAAECEPYI
TADDVLMRQY AHEIIQGIEI VEHILKPKLT IIGIEDNKPE AVAALQQAAQ DKPMVIRVIP
TKYPSGGEKQ LIKILTNLEV PKGGIPADIG LMVQNVGSLQ AIARAIVHGE PLIRRVVTLT
GDCFRKPRNV WALLGTPVQA LLNEFGYKAD KKLPRLIMGG PMMGFTLPHA QVPITKTANC
ILAPTRNELT SSDNEMACIR CGQCAEACPV SLLPQQLQWH AKAEEFDKCE ELDLKDCIEC
GACAYVCPSE IPLVQYYRQA KAEIRTRSLE AEAAERAKAR FEEKKARMER DKAERENRFK
QAAEDRRKEM QQQGGSDAIA AAIERVKAQK AQLEPTDNSV KPAIAAAIAR AKAKQAEAAQ
SGASEPDNSE MAKLREERKR QARERKAQKG EVTEASTSDG ADDKKSAVAA AIARAKARKA
EQQETESAAQ PAQATPSSDD ADPKKAAVAA AIARAKARKA EQGTESTAQP AQATPSSDEA
DPKKAAVAAA IARAKARKAE QQETESTAQP AQATPSSDDA DPKKAAVAAA IARAKARKAE
QQETKSTAQP EQATPSSDDA DPKKAAVAAA IARAKARKAA QQSSSNLNAE EKD
|
|---|
| |