| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0411 |
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| Symbol | |
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| ID | 5137455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 437431 |
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| End bp | 438165 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640531869 |
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| Product | tRNA pseudouridine synthase C |
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| Protein accession | YP_001216366 |
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| Protein GI | 147674217 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGAGA TTGTTTATCA AGATGAATAT TTGGTGGCGG TCAATAAACC GGCTGGCATG
TTGGTGCACC GTTCATGGCT CGACAAGCAT GAAACCGAGT TTGTGATGCA GACCCTGCGC
GATCAAATTG GTCAGCACGT TTTCCCGCTA CACCGTCTGG ATCGCCCGAC ATCCGGTGTG
TTGGTGTTTG CGCTTTCGAG TCAGATTGCC TCTGAAGTGA TGCCGATGTT TGCCAATCAT
GAGATGGAGA AAACCTACCA CGCCATTGTG CGCGGCTGGA TTGAAGAGGC AAATGTGCTC
GATTATCCAC TCAAAGAAGA GCTCGACAAA ATTGCCGATA AATTTGCCAA GCAAGATAAA
GAAGCGCAGT CGGCGGTGAC AGCTTATCGG CCACTCGCCA AAGTGGAACT GCCCATTGCT
ACGGGAAAGT TTGCCACTAC CCGCTATTGC TTGATGGAGA TGCAACCGAA GACCGGGCGC
AAACATCAGC TGCGTCGTCA TATGGCACAT CTGCGTCATC CGATAGTGGG TGATACCACC
CATGGCGATG GAGTTCATAA CCGACTGTTT CGTGAACACT TTTCCGCGCA ACGTTTGATG
CTGCATGCCA GCGAGTTACG TTTTATGCAT CCTTATACCC AGCAGCCGTT AGTGATTCGC
GCTGGACTAG ATGAAGTGTG GCAAGGCTTG CTTAGTGAGT TTGGTTGGCA AGAGTCGCTG
TTAATCAACG CTTGA
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| Protein sequence | MLEIVYQDEY LVAVNKPAGM LVHRSWLDKH ETEFVMQTLR DQIGQHVFPL HRLDRPTSGV
LVFALSSQIA SEVMPMFANH EMEKTYHAIV RGWIEEANVL DYPLKEELDK IADKFAKQDK
EAQSAVTAYR PLAKVELPIA TGKFATTRYC LMEMQPKTGR KHQLRRHMAH LRHPIVGDTT
HGDGVHNRLF REHFSAQRLM LHASELRFMH PYTQQPLVIR AGLDEVWQGL LSEFGWQESL
LINA
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