Gene VC0395_A0264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0264 
Symbol 
ID5136663 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp277376 
End bp277999 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content46% 
IMG OID640531722 
Productanti-oxidant AhpCTSA family protein 
Protein accessionYP_001216220 
Protein GI147673354 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0450] Peroxiredoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.000696752 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCTTAGGA GCAAAAAAAT GGTACTAGTT GGTCGCAAAG CCCCTGATTT TACTGCAGCT 
GCTGTTCTTG GTAACGGTGA AATCGTTGAT AACTTCAACT TCGCAGAATT TACAAAAGGT 
AAGAAAGCGG TTGTTTTCTT CTACCCACTA GACTTCACTT TCGTTTGCCC ATCTGAACTG 
ATTGCATTCG ACAACCGTTA CGAAGACTTC CTTGCTAAAG GTGTAGAAGT GATCGGTGTT 
TCTATCGACT CTCAGTTCTC TCACAACGCA TGGCGTAACA CTGCTGTTGA AAACGGCGGT 
ATCGGTCAAG TGAAATACCC ACTGGTTGCA GACGTTAAAC ACGAAATCTG TAAAGCTTAC 
GATGTTGAGC ACCCAGAAGC TGGCGTGGCT TTCCGTGGTT CATTCCTGAT CGACGAAGAA 
GGCATGGTTC GTCACCAAGT AGTGAACGAT CTGCCACTGG GTCGTAACAT CGACGAAATG 
CTACGTATGG TTGATGCACT GAACTTCCAC CAAACTCACG GTGAAGTGTG CCCAGCACAA 
TGGGAAGCAG GCAAAGCAGG TATGGAAGCA TCTCCAAAAG GCGTTGCAGC ATTCCTGTCT 
CAATACTCTG CTGACCTAAA ATAA
 
Protein sequence
MLRSKKMVLV GRKAPDFTAA AVLGNGEIVD NFNFAEFTKG KKAVVFFYPL DFTFVCPSEL 
IAFDNRYEDF LAKGVEVIGV SIDSQFSHNA WRNTAVENGG IGQVKYPLVA DVKHEICKAY 
DVEHPEAGVA FRGSFLIDEE GMVRHQVVND LPLGRNIDEM LRMVDALNFH QTHGEVCPAQ 
WEAGKAGMEA SPKGVAAFLS QYSADLK