| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0233 |
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| Symbol | |
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| ID | 5136316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 242024 |
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| End bp | 244399 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640531693 |
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| Product | signal protein domain/GGDEF domain-containing protein |
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| Protein accession | YP_001216196 |
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| Protein GI | 147674861 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTAA ACCATAGAAT TCTGTTACTG ATTGCACCGA TGATCCTGCT CAGTGCAGCC
GCATCAAGCT ACATCATTTA CACCAGTCAG AAAAATGCGC TGCTAAAAAG AACCGACAGT
TACCTGCAGT TGAATATTGA AAAGTTAGCC AGCCACTATC GACAAGCTCA GTCGCTCGTC
AGCAGTTATG CCTTCACGCT GGCCAAAAGT GACATCATCC GCCACTACTT CTCTTTAGAA
AAAAATCCTT ACCGCGAACT AGAACTGGTG GATAACTTAC GTGAAACCCT GCAAATTTTG
CAGCCGAATG AAAAACAGCT CGTGTCGTTA TCGATCCTCA ATGGCCATGA AGAGCTGCTT
TATTATGCGG AAAATAGCTC CGATCCATTT GCCGAGCTTG ACCCTAAGGT GATGGCGTAC
ATCAAACAGC GTTTTGCATC CACACAAAAA AACTCTGATA TCAGCTACAC CGTCAACTCA
GCGGGTGAAG ATATTTTGGT TCGCTACGAT ATGTTGGATA CTCAGACACT CTCAACGCCG
CTCAGTTATA ACCGCCAAGA CGTGTTTTTT GTGGTGGTGT ATGTGGTGCT TGAGCAGTTC
AGCCAACTGC GTAAAAAAAT TGAATTTGAT AACCAGAGCC CGATATTTTT TACGCATTCA
CCTCCGAGCT ACCGCACGGG CTTATTGCAA TCGGTTGAAT TACAACCGGG CTTTTACGCC
ATACTCGACC CTGCACCGAA ACTGATTAAC GCCCAGCTTC ACTCCATTCA GCGCGAACTT
TTACTCTCTT TTGGCGTTTC GGCACTGGTG ACGGTACTCA TGCTACTGCT CCTTCTCTAT
CGCCATGTGA TCAATCCGAT CCTGCATTTG GATAAACAGC TTGAAGAGGT GGAAAACAAC
CAACGTAAGA ACATTGAAAA ACTCAATACT GACGATGAAA TTGGGCGGCT TTCCTCGCGT
TTTTACGCTA TGTACAGCGA ACTTCATTCA ACCTATCAAC GCACGAAAGC ACTTGCGGAA
AACGATCACC TCACCAAGCT GGCTAACCGC TATCAATTTC AAGTTCAAGC CGATCTGCTG
CTATCACGTT GTTACGATAC TCAGCATATC TGGGTCATGT ATATCGACTT AGATAACTTC
AAGTACGTTA ATGATAAGTA TGGTCACCAA ATCGGTGATT CCTTACTGGT CAGCTTCGCG
ACCCACGTTC GCCAGTTATG TAAAAATTTT GAGGCCAGCC ATAACACCTA CAGTATTGCG
GCCCGTTTAT CTGGTGATGA GTTTGCTATT TTGCTCGTCT CCCCCAAACG GTTTAATGAT
TGTGCGAAGA TCTTTGCTCA ACGCTTGTTG GCACCGATCC AAAATAAAGA CAACTCACCA
CTTAGCCATT TTCCCATTAC TGCCAGTATT GGTATTGCGA CTTTCCCTAA AGATGGCGAA
CACATTGAGA AATTGCTGCT CAATGCCGAT ACCGCCATGT ATCAAGCGAA AAATGCGGGC
AAAAACCAAG TCGCTTACTA TTCGCAGGCG CTAGATCAAA TAGTACAGCG GCGCAATAAT
ATTGAACGAG CACTGCGCTT AGGGTTATTT GATCAAGAGT TCAATTTGGC TTATCAACCT
TACTTTACTT GCTCAGGGAA ACGCTTAGTG GGCTTCGAAG TATTGCTGCG CTGGCAATCT
GAATTGCTCG GTGAAGTGTC GCCAGAAGAG TTCATTCCAA TTGCAGAGCA AACTGGATTG
TTTGGCACGA TCGACCGCTG GGTCATTTCA AAAGCTTTTC AAGAGATATC AACTCTACAA
GCCATAGTGA AAGAGCCGAT CCAGGTGTCG ATCAACCTCT CTTCGGCAGA ACTCAATTCG
CTGAAATTGG CTCAATTTAT CCATCGACAG GCTGAGCAGT TTGGCGTTTC TCCCGCATGG
ATCGATTTTG AAATCACAGA AACGTTTGCC GCAGATTCGC AAAGCTTCCC ATTGCTGCAC
GAACTCTCGC GTCTTGGCTA TGGGTTAACG ATTGATGATT TTGGCTCAGG CTATACCTCT
ATTACTCAGT TGGTGCAGTA TCCAGTACAA AAGATTAAGT TTGATCGCCA TTTTTTGGAT
ACACTCATCG CCACCAACAA ACAAAATGTT ATTCGTCCAC TGATTGATCT CTGCCACTCT
CAATCCATGA AAGTGACCGC TGAAGGCATT GAGAGTGAAA CTATGCATCA ATGGTTGGCC
GATTATGAGT GCGATTACAT GCAAGGCTTC TACTTTGGTT ATCCAATGAG CCTAAGCGAG
ATCTCCCCAT GGCTTCATGC CTCCAATCAT AAAAAGAAGA GTTATGCGCA AGATCATTAT
TGCTTCACAG AACCCAGCCA AAGTGAATGC CGTTAG
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| Protein sequence | MKLNHRILLL IAPMILLSAA ASSYIIYTSQ KNALLKRTDS YLQLNIEKLA SHYRQAQSLV
SSYAFTLAKS DIIRHYFSLE KNPYRELELV DNLRETLQIL QPNEKQLVSL SILNGHEELL
YYAENSSDPF AELDPKVMAY IKQRFASTQK NSDISYTVNS AGEDILVRYD MLDTQTLSTP
LSYNRQDVFF VVVYVVLEQF SQLRKKIEFD NQSPIFFTHS PPSYRTGLLQ SVELQPGFYA
ILDPAPKLIN AQLHSIQREL LLSFGVSALV TVLMLLLLLY RHVINPILHL DKQLEEVENN
QRKNIEKLNT DDEIGRLSSR FYAMYSELHS TYQRTKALAE NDHLTKLANR YQFQVQADLL
LSRCYDTQHI WVMYIDLDNF KYVNDKYGHQ IGDSLLVSFA THVRQLCKNF EASHNTYSIA
ARLSGDEFAI LLVSPKRFND CAKIFAQRLL APIQNKDNSP LSHFPITASI GIATFPKDGE
HIEKLLLNAD TAMYQAKNAG KNQVAYYSQA LDQIVQRRNN IERALRLGLF DQEFNLAYQP
YFTCSGKRLV GFEVLLRWQS ELLGEVSPEE FIPIAEQTGL FGTIDRWVIS KAFQEISTLQ
AIVKEPIQVS INLSSAELNS LKLAQFIHRQ AEQFGVSPAW IDFEITETFA ADSQSFPLLH
ELSRLGYGLT IDDFGSGYTS ITQLVQYPVQ KIKFDRHFLD TLIATNKQNV IRPLIDLCHS
QSMKVTAEGI ESETMHQWLA DYECDYMQGF YFGYPMSLSE ISPWLHASNH KKKSYAQDHY
CFTEPSQSEC R
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