| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0209 |
|---|
| Symbol | nhaR |
|---|
| ID | 5137573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 214833 |
|---|
| End bp | 215723 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640531669 |
|---|
| Product | transcriptional activator NhaR |
|---|
| Protein accession | YP_001216172 |
|---|
| Protein GI | 147674750 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000105029 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCATC TTAACTATAA CCACCTCTAT TATTTCTGGA TGGTGTGTAA ACAAGGCTCG
GTAACCAAAG CGGCCGATGC TCTGTTTTTA ACGCCCCAAA CCGTGACGGG GCAGATCAAA
GCTTTGGAAG AACGACTTGA TGGTAAGTTG ACGAAACGTA ATGGCCGCAG TATTGAGCCG
ACTGAATTGG GACAGTTGGT CTTTAAATAC GCTGATCGTA TGTTTGGCTT GAGTTATGAA
ATGTTGGATA TCGTTAACTA TAGCCAGCGT TCAAACTTGC TGTTTGATGT GGGAGTGGCA
GACGCCTTAT CCAAAAGATT GGTGAGCAAA ATATTGCTGA CCTCAGTACC CGGTGATAAC
CGGATTCATC TACGCTGCTT TGAATCAACC CATGAGATGC TATTGGAACA GTTAGCACAG
CATAAGTTGG ATATGATCTT ATCTGATTGC CCAGTGGATT CGAGCCAAAG TCCCGGCTTA
TTTAGTAAAA AACTCGGTGA GAGTCGCATG AGTTTTTTCA GCTTTGGTGA CGTGGATTTT
GCGCCATTCC CCGCGGTGTT GCAGAGTAAA AAATTGTTAG TTCCAGGCAG TCGAACCGCA
ATGGGGCGTA AAGTGCGGCA GTGGTTTGAT CGTCAAGGGT TACAACCACA TATTCTCGGT
GAATTTGATG ACTCTGCTTT AATGAAAGCG TTTGCCATCT ATCACAGTGA TGCCGTGTTT
ATGGCTCCTT CTTTTTATGT CTCAGAAGTG GATGCGGAAT CATCATTGAA ACTCATCGGA
CATGTGGATG AGATTAAAGA GGAGTATTAT GTCATCTTCG CTGAACGCAT GATCCAGCAC
CCAGCAGTAA AAAATGTCTG TGATGCTGAT TTTACTAACT TATTTTTGTG A
|
|---|
| Protein sequence | MSHLNYNHLY YFWMVCKQGS VTKAADALFL TPQTVTGQIK ALEERLDGKL TKRNGRSIEP
TELGQLVFKY ADRMFGLSYE MLDIVNYSQR SNLLFDVGVA DALSKRLVSK ILLTSVPGDN
RIHLRCFEST HEMLLEQLAQ HKLDMILSDC PVDSSQSPGL FSKKLGESRM SFFSFGDVDF
APFPAVLQSK KLLVPGSRTA MGRKVRQWFD RQGLQPHILG EFDDSALMKA FAIYHSDAVF
MAPSFYVSEV DAESSLKLIG HVDEIKEEYY VIFAERMIQH PAVKNVCDAD FTNLFL
|
|---|
| |