| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0158 |
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| Symbol | |
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| ID | 5136835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 158183 |
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| End bp | 161302 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640531618 |
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| Product | putative multidrug resistance protein |
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| Protein accession | YP_001216123 |
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| Protein GI | 147674212 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0453777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCACTC TGATTGATGC GGCGCTGTCT CGTACGCGCA CCATGTTGAC CTTACTGGTG
TTCATTTTGG TTGCGGGTGT GGCGACTTAC CTGACCATTC CCAAAGAATC GAGCCCCGAT
GTCACCATTC CTATCATCTA CGTTTCGGTG AGCCACCAAG GTATTTCTCC CAGTGATGCG
GAAAGATTGA TTGTTCGTCC TCTTGAGCAG GAAATGCGCT CGATTGAAGG GGTGAAAGAG
ATGACGGCCA CCGCGTCAGA AGGGCATGCT TCTGTTGTGC TGGAATTCAA TGTAGGCGTC
GATTTAGCCA AAGCGATGGC CGATGTGCGT GATGCGGTCG ATTTGGCTAA ACCCAAATTA
CCGGCGGACA GTGATGAGCC GACGGTGAAT GAAGTGACGC TGGCGGCGGA ACAGCCTGTT
TTATCTGTTG TGCTCTACGG TACAGTACCG GAGCGAACGA CAGTTCTGAT AGCCCGTCAA
TTACGCGATA AATTGGAAAG CTTTCGACAG ATCTTGTCTG TTGATATCGC AGGGGATCGT
GAAGAGATTG TGGAAATCAT CGTTGATCCA CTGCTTATGG AGAGCTATGG ACTGGATCAA
AGCGACATCT ACAATCTGAT TGCACTCAAT AACCGAGTGG TCGCCGCCGG ATTTGTCGAT
ACCGGTTATG GCCGCTTTTC GGTCAAAGTG CCTTCCGTGT TTGAATCACT GAAGGATGTA
CTAGAGCTGC CGATTAAAGT CGAAGGTAAG CAAGTGATTA CGTTCGGTGA TGTGGCTACA
GTACGCAAAT CTTTCCGTGA TCCTGAGAGC TTCGCTCGCT TAGATGGTAA ACCCGCCATT
GTTTTGGATA TCAAAAAACG TTCTGGTGAG AACATTATTG AAACCGTTGA GCTAGTCAAA
GCGGTGTTAG GCGAAGCTCA AGCTCGTGAT GATTGGCCTA ATAATTTATT GGTGAAAACG
ATTTGGGATG AGTCGGAAGA TGTCAAACTC ATGCTCAATG ATCTACAAAA CAATATTCTG
TCCGCCATCA TTCTCGTAGT GGTGGTTATC ATTGCGATTC TGGGCGTACG CACTTCGCTA
TTGGTTGGGG TTTCGATTCC TGGATCTTTT TTGACTGGGT TATTGGTACT GGCCGTTTTC
GGTCTGACGG TCAATATCGT TGTGCTGTTT GCTCTTATCA TGGCTGTTGG CATGCTGGTG
GATGGCGCAA TCGTGGTGAC TGAATTTGCG GATCGACGTA TGCAAGAGGG AATGCATCGA
AGTGAAGCCT ATCGTGATGC GGCGAAACGT ATGGCTTGGC CAATCACCGC CTCTACCGCG
ACCACGTTGG CCGCTTTTGC CCCACTGCTG TTTTGGCCAG ATGTCACTGG CGAATTCATG
AAATACCTTC CGCTGACTTT AATGGCGACG CTCACTGCCT CTTTAGTGAT GGCGTTGCTC
TTTGTTCCGG TATTGGGAAG TTTGTTTGGT CGTCCGCAGA AAGTGACCCA AGCCAATCAA
GCGCGGATGG TGGCGCTGCA CAATGGTGAT TTTTCACAAG CGACGGGGAT CACCAAAGCC
TATTACAGCA CGCTTGCCAT AGCGATTCGC CACCCGATCA AAATTTTGTG CGGTGCGCTG
CTGATGTCTG CGGCGATTGC GTTTGCTTAT GGCAAAGCAG GGTTAGGTGC AGAGTTTTTT
CCTGAAGTTG ATCCGCCCTT TTTCTCGGTC AAAGTGCGCT CTTATGGCGA TCTGTCGCTG
AATGAAAAAG ATCGTATCAT GAGTGATATT GAACAGGTGA TGTTAGGCCA CGATGAGTTT
GAAAGTGTCT ATACCCGTAC GGGGGGCGAT GATGAAATCG GCGTCGTACA GATAACCCCC
GTTGATTGGC AATATCGTCG CAGTGTTAAA GCGATTATTG AGGAACTGGA GCAAGTCACC
GATACCTTCC CAGGGGTTGA AATCGAATAC AAATTTCCAG ACGCAGGGCC CCCTGTTGAG
CATGATCTGG AGATTGAAAT TTCAGCTCGC GTTGCTGACG ATCTCGATAA AGCCGCTCAG
CAAGTGAGGT TATGGGCAGA GGCCAATCCG GCACTGACCA ATTTAAGCGA TAATGGCAGC
AAGCCGGGGA TTGATTGGAA AATTGATATT CGACGTGATG ATGCATCACG TTTTGCGGCC
GATGCTACTT TGGTGGGCAA TACCGTACAG TTTGTGACAA ATGGCCTCAA AATTGGCGAT
TATCTTCCCG ATGACAGCGA TGAAGAAGTC GATATTTTGG TACGTTATCC GAGTGAATAT
CGCGATATTG GACGTTTTGA CCAACTACGC GTAAAAACCG CGCAAGGTTT AGTGCCACTC
ACTAATTTTG CGCAAATTAT TCCAGAGCAA AAGCAGGATA CGATTCATCG GGTGGATGGT
CGACGGGTAA TTAGCGTGAT GGCCGATCTC AAGGAAGGGT ACAACCTAGC GCTAGAACTC
CCAGCCATTG AACAGGCACT ACGTGAGCTC AATTTACCGA GTAGTGTGGA GTTTCGTATC
CGTGGTCAAA ACGAGGAGCA AGAGCATTCT GCGGTTTTCC TCGAAAAAGC GTTTATGGTT
GCACTCGCGG CGATGGCGAT CATTTTGATC ACCCAGTTCA ATAGTTTCTA TCAAGCCTTC
CTGATTTTGA CCGCGGTGAT TTTCTCTACC GTAGGGGTTT TTGCTGGATT GCTGATTTTC
CAAAAACCGT TTGGCATCAT CATGTCTGGC ATCGGGGTGA TTGCTCTGGC AGGGATTGTG
GTGAACAACA ATATCGTATT GATTGATACC TATAATCAAT TGCTTAAGCG TGGTTTGAGC
CGAGAAGAAG CGATACTGCG CACGGGAGTG CAGCGTTTGC GCCCAGTGCT GCTGACGACG
GTGACGACGA TTTTAGGTTT GCTGCCCATG GTGCTTGAGA TGAATATCGA CATCATCAAT
CAGAAAATTG AGTTTGGAGC ACCGAGTACC CAGTGGTGGT CACAGTTGGC GACGGCGGTG
GCCGGAGGAT TAGCCTTTGC TACGGTACTG ACCTTAGTGC TTACCCCTTG CTTGCTCATG
TTAGGGCGGC GTAGAAAAGG GGTAAGTGAA GACGAAGCTC CTCAAGATGC GCAGAGTTAA
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| Protein sequence | MFTLIDAALS RTRTMLTLLV FILVAGVATY LTIPKESSPD VTIPIIYVSV SHQGISPSDA
ERLIVRPLEQ EMRSIEGVKE MTATASEGHA SVVLEFNVGV DLAKAMADVR DAVDLAKPKL
PADSDEPTVN EVTLAAEQPV LSVVLYGTVP ERTTVLIARQ LRDKLESFRQ ILSVDIAGDR
EEIVEIIVDP LLMESYGLDQ SDIYNLIALN NRVVAAGFVD TGYGRFSVKV PSVFESLKDV
LELPIKVEGK QVITFGDVAT VRKSFRDPES FARLDGKPAI VLDIKKRSGE NIIETVELVK
AVLGEAQARD DWPNNLLVKT IWDESEDVKL MLNDLQNNIL SAIILVVVVI IAILGVRTSL
LVGVSIPGSF LTGLLVLAVF GLTVNIVVLF ALIMAVGMLV DGAIVVTEFA DRRMQEGMHR
SEAYRDAAKR MAWPITASTA TTLAAFAPLL FWPDVTGEFM KYLPLTLMAT LTASLVMALL
FVPVLGSLFG RPQKVTQANQ ARMVALHNGD FSQATGITKA YYSTLAIAIR HPIKILCGAL
LMSAAIAFAY GKAGLGAEFF PEVDPPFFSV KVRSYGDLSL NEKDRIMSDI EQVMLGHDEF
ESVYTRTGGD DEIGVVQITP VDWQYRRSVK AIIEELEQVT DTFPGVEIEY KFPDAGPPVE
HDLEIEISAR VADDLDKAAQ QVRLWAEANP ALTNLSDNGS KPGIDWKIDI RRDDASRFAA
DATLVGNTVQ FVTNGLKIGD YLPDDSDEEV DILVRYPSEY RDIGRFDQLR VKTAQGLVPL
TNFAQIIPEQ KQDTIHRVDG RRVISVMADL KEGYNLALEL PAIEQALREL NLPSSVEFRI
RGQNEEQEHS AVFLEKAFMV ALAAMAIILI TQFNSFYQAF LILTAVIFST VGVFAGLLIF
QKPFGIIMSG IGVIALAGIV VNNNIVLIDT YNQLLKRGLS REEAILRTGV QRLRPVLLTT
VTTILGLLPM VLEMNIDIIN QKIEFGAPST QWWSQLATAV AGGLAFATVL TLVLTPCLLM
LGRRRKGVSE DEAPQDAQS
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