Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0157 |
Symbol | |
ID | 5136002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 157072 |
End bp | 158172 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640531617 |
Product | hypothetical protein |
Protein accession | YP_001216122 |
Protein GI | 147674168 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTCCGC TCAAAACTTC TTCACGTCAA GCGCGCGACT ACTTTCTGCA TCAACCTTGG CTGATTTCTT TTTCCTTCAT TATTCTGTTA GCACTCTGGT TAGGCTTAGG CGATTCCAAC GCCGAAGAGC CGCAAACGGC GATGGAAATA CAAGTCCCTT TAGCCAAAGT CGGTTATCAA ACGTTTAGCG CAACTCAAAC CGATAAAGTT ATCGAGCTGT ACGGACGCAC TGCGCCGGAT CGGCAGGCTA AAATTGGTGC TGAAATTGCT GGGCGGATCG CCGAGGTGAA GATTGCGAAA GGGCAAATGG TCACCAAAAA CCAGATAATC GCCTTGATTG ATAAAGGCGA TCTGGATGCC CAGTTAGAGC GAGCGAAAGC GCAGCTCAAA GTGCGACAAC AAGAGTTTAA TGCGGCTAGT GCACTGAAAA ATAAAGGCTT ACAAGGCGAA GTTGCTTTTA CCAATGCTGC TGCTGCTCTC ACAGATGCAC AATCCTCGCT CAGTACTGTG CAACGTTTAC TGGATAATAC CCAAGTTCGC GCCCCCTTTG ATGGTGTCGT GGAGACTTTA CCTATCGAAA AAGGCGATTT TGTTGGGATT GGCGATCCGG TTGCCTCCAT TATCGATCTG CACAAATTGG TGATAGAGGC TGATGTCAGT GAGCGACACA TTCAACATGT ACAGCTTGAA CAAGCGGCGC GGATCCGCTT TATCGATGGC ACGCAAACAC AAGGTAAAGT CCGCTATATT TCAAGGCTCT CATCGCCTGC AACCAATACC TTTGCCATTG AAGTTGAGGT CGATAACCCA CAACAAGCCA TTCCTGCAGG GGTAAGCGCA GAAGTTGAGT TGAGCCTAAT GTCTCAAGCC GCGATCAAAA TCACCCCCGC CATGCTCGCG CTCGATGAAG AGGGCAACCT TGGCGTGAAA ACGTTGCAAG GTGAACACGT CAAGTTTGTG CCAATCCAAC TGGTGAAAGC AGAACAAGAT GGCGTCTGGT TAACCGGACT TGGCGAGCAA GTGGATATTA TTACCCGTGG ACAAGGATTT GTTCGCGATG GAGATAAGGT TCTCGCCACT CAACTCAGCG CAACCCACTA G
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Protein sequence | MFPLKTSSRQ ARDYFLHQPW LISFSFIILL ALWLGLGDSN AEEPQTAMEI QVPLAKVGYQ TFSATQTDKV IELYGRTAPD RQAKIGAEIA GRIAEVKIAK GQMVTKNQII ALIDKGDLDA QLERAKAQLK VRQQEFNAAS ALKNKGLQGE VAFTNAAAAL TDAQSSLSTV QRLLDNTQVR APFDGVVETL PIEKGDFVGI GDPVASIIDL HKLVIEADVS ERHIQHVQLE QAARIRFIDG TQTQGKVRYI SRLSSPATNT FAIEVEVDNP QQAIPAGVSA EVELSLMSQA AIKITPAMLA LDEEGNLGVK TLQGEHVKFV PIQLVKAEQD GVWLTGLGEQ VDIITRGQGF VRDGDKVLAT QLSATH
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