Gene VC0395_A0145 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0145 
Symbol 
ID5137313 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp142231 
End bp143226 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content49% 
IMG OID640531605 
Productpeptide ABC transporter, ATP-binding protein 
Protein accessionYP_001216110 
Protein GI147674358 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones70 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAAC CACATGGCGA ATTACTGGTT GAGGGAAAAA ATCTGGTTAA AGATTTTGCC 
ATCAACAGTA ACGCACTCAA ACAACCCATG ATGCGTGCCA TCAACGACGT ATCATTCAAA 
ATGTACAAAA GTCGCGGTTT ATCTGTGGTG GGTGAGTCTG GCTCAGGCAA ATCCACCACC 
GCCAAGATGA TCGCCAAAAT GTACGCGCCG ACCTCTGGGG TTATCGAGTA CAAAGGCCGT 
GATATTCAGG ACATCGTTTC TCGTGACGAC CTGATGCATT ACCGCGAAGG CGTACAGATG 
GTATGGCAAG ATCCGTTTGG CTCACTCAAC CCGACCCATA CCATTTTCCA CCACATTGCT 
CGCCCGCTGC TGATCCACAA AAAGGTTACG CCGGGCAACA AAAAAGAGTT GGAAGAGCGT 
GTTTACGAAC TGCTTGAACA AGTCGGCCTC ATCCCACCAA AAGCTACGGC CGCGAAATAT 
CCGCACCAAC TTTCTGGTGG TCAGCGTCAG CGCGTTAACT TAGCACGTAA CATTGCTGTT 
GGTGCTGAGG TTGTTCTGGC TGATGAACCC ACTTCAATGC TCGATGTGTC AATCCGTGCA 
GGCGTACTCA ACCTGATGGA AGAGATGAAG TTTGAGCGTC AAATGTCTCT GCTATACATC 
ACGCACGACA TCGCGACCGC TCGCTACATC GCTGAAGATT TAGCCGTTAT GTACGTAGGA 
CACATGGTGG AATGGGGTGA TACCGATGAG ATCATTCACG ATCCACAGCA CCCTTACACC 
AAGCTGTTAG TCTCTGCGGT ACCTGATCCG AAAAAGTCGA TCCACGAAAA ATTGGAAGGC 
AACAAAGGCG AGATCCCACT GTGGACTCCG AATTCTGTCG GCTGCCCATT TGCAGGACGC 
TGTTTGTACG CTTCCGCGAA ATGTCGCGAA GCCTTGCCAG AAGTCACTCA GTTGTCTGAC 
AACCACTTTG TTCGTTGTTA TCTGTTTGAA AAATAA
 
Protein sequence
MSKPHGELLV EGKNLVKDFA INSNALKQPM MRAINDVSFK MYKSRGLSVV GESGSGKSTT 
AKMIAKMYAP TSGVIEYKGR DIQDIVSRDD LMHYREGVQM VWQDPFGSLN PTHTIFHHIA 
RPLLIHKKVT PGNKKELEER VYELLEQVGL IPPKATAAKY PHQLSGGQRQ RVNLARNIAV 
GAEVVLADEP TSMLDVSIRA GVLNLMEEMK FERQMSLLYI THDIATARYI AEDLAVMYVG 
HMVEWGDTDE IIHDPQHPYT KLLVSAVPDP KKSIHEKLEG NKGEIPLWTP NSVGCPFAGR 
CLYASAKCRE ALPEVTQLSD NHFVRCYLFE K