| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0099 |
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| Symbol | degS |
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| ID | 5137288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 89188 |
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| End bp | 90246 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640531559 |
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| Product | protease DegS |
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| Protein accession | YP_001216064 |
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| Protein GI | 147675045 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00000000230294 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAAAT TTTGGGTTCG CTCAATCAGC CTTGGGTTGT TGGCTGCGAT TGCCATTATT
ATGGTGACAC CCTCACTACG CGCCAAATTA ATGCCCGTTG TCGAACAACC ACGCAACATC
GGCGCTCTAC AAATCTCATT TAATGAAGCG GTACGCAAAG CCGCCCCTGC CGTCGTCAAT
ATTTATAACC GTAAATACAG CGAAAATGAT CGCCGTAAAC TCTCGATTCA AGGTTTAGGA
TCCGGTGTCA TTGTCAGCGA AAAAGGCTAC ATCATCACCA ACTACCACGT CGTCGCGCAG
GCCGATCAAA TTGTCGTTGC TCTACAAGAT GGGCGAGCCG CAGCAGCACA ATTGGTGGGA
AAAGATCGCC GTACCGATAT TGCCGTATTA CGCGTAGAAG GCACGGGTTT ACCAGTGATT
CCACTCAATC CAGATTACCA TCCTAAAGTG GGGGACGTGG TGTTGGCGAT TGGTAACCCT
TACAACTTAG GGCAAACCAC GACTTTCGGA ATTATCTCGG CTACCGGACG TTCATCCATC
AGCGCTGATG GTCGCCAAGC CTTTATTCAA ACTGATGCCG CAATCAATGA CGGCAACTCA
GGTGGTGCAT TGGTCAATAC CCAAGGTGAA CTGGTCGGCA TCAATACCGC CTCTTTTCAA
CAAGCCACCG ATCTCGAAAC TTACGGGATT TCGTTTGCGA TTCCCTACTC TTTGGCCAGT
AAAATTATGA CCAAAATCAT TGCTGATGGC CGCGTGATCC GCGGTTATAT TGGCGTCGAC
GGTCAAGATA TTAACTCGAT GACATCACGT TTGCTGGGGA ATGAGCATGT CGGTGGGATC
ATTATTTTAG GGGTTGACCC GAATGGACCC GCAGCCCGAG CAGGCTTTCT GGAGCAAGAT
ATTTTGCTGA AAATCGACGG TAAAAAAATT AATGGCCGCC AGAATGTCAC AGATACCGTC
ACCGATCTTC GCCCCGGCAC TGTGGTGGAT TTCACCCTAC TGCGTAAGGG TGAAGAGATT
GTACTCCCAG TTACGATTGG TGAAGACACT CGTGATTAG
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| Protein sequence | MLKFWVRSIS LGLLAAIAII MVTPSLRAKL MPVVEQPRNI GALQISFNEA VRKAAPAVVN
IYNRKYSEND RRKLSIQGLG SGVIVSEKGY IITNYHVVAQ ADQIVVALQD GRAAAAQLVG
KDRRTDIAVL RVEGTGLPVI PLNPDYHPKV GDVVLAIGNP YNLGQTTTFG IISATGRSSI
SADGRQAFIQ TDAAINDGNS GGALVNTQGE LVGINTASFQ QATDLETYGI SFAIPYSLAS
KIMTKIIADG RVIRGYIGVD GQDINSMTSR LLGNEHVGGI IILGVDPNGP AARAGFLEQD
ILLKIDGKKI NGRQNVTDTV TDLRPGTVVD FTLLRKGEEI VLPVTIGEDT RD
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