| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0058 |
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| Symbol | truD |
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| ID | 5137571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 52050 |
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| End bp | 53135 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640531518 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001216031 |
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| Protein GI | 147673999 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGATA TTCTCTCTCC TCTGGCTTAT TTGTGCGGTA AACCGACTGC GAAGGCCAAA
CTCAAAGCGC TGCCAGAACA CTTCCAAGTC AATGAAGTGT TGGGCTACTC CTTAACGGGA
CACGGCGAGC ACTTGATGGT GCGTATTCGT AAGACAGGGG AGAACACCAG CTTTGTGGCC
AATGAATTAG CCAAAGCCTG TGGCGTACCT TCACGCGCGG TGAGCTGGGC GGGTTTAAAA
GACAGGCATG CCGTTACCGA GCAGTGGTTG AGTGTGCATC TGCCGAATGG CGAAACGCCG
GATTTCTCTG CGTTTCTAGC ACAATACCCT AGCATTGAAA TTCTTGAGGT GACTCGCCAC
GACAAAAAGC TTCGTCCGGG TGATTTGCAA GGCAATGAAT TTGTCGTCAC CCTATCGGAA
GTAAGCGATG TTGCAGCGGT ATTAAGCCGT TTAGAAACGG TTGCTGAATT GGGCGTTCCC
AATTACTTCG GTAGCCAGCG TTTTGGACGT CATGGCAATA ACCTCAGTGA GGCGCGCCGT
TGGGGGCGTG ACAATGTCCG TTCGCGCAAT CAGAATCAGC GCAGCTTATA TCTGTCTGCG
GCTCGTTCGT GGATTTTCAA CCAGATTGTC TCAAAGCGAA TTGAGCAGGG CTGTTTTGCC
CGCTTTATTG AAGGTGATAT CGCTTTAGCT GAGCAGCAAA TGTTTAATGT TGATGGTGAT
TTAGCCCTTT GGGATCAGCG TTTGCAAGCT GGAGAAGTAG CGATTTCAGC GGCTTTGGCG
GGCGATAATG CCTTGCCGAC TTCTGGTCAA GCCTTGCCAC TGGAACAAGC TGAATTGGAT
GCAGAGCCCG ATTTAATGGC GCTGATCCGG GGGAATCGTA TGCGCCATGA TCGCCGTGCG
ATCGCCTTAA AAGCGCAAAA CTTAAGCTGG CAAGTGCAAG AAGATCAAAT CACTCTGCGT
TTCTCATTGG ATGCGGGTAG CTTTGCCACT TCCTTAGTGC GTGAATTGAT CGAAGAGATC
CCAGTGGTGC GTCATTACGA TCAAGGCCAT GAACAAGAGA GCCGCGATTC AGAGAGCGAA
GATTAA
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| Protein sequence | MTDILSPLAY LCGKPTAKAK LKALPEHFQV NEVLGYSLTG HGEHLMVRIR KTGENTSFVA
NELAKACGVP SRAVSWAGLK DRHAVTEQWL SVHLPNGETP DFSAFLAQYP SIEILEVTRH
DKKLRPGDLQ GNEFVVTLSE VSDVAAVLSR LETVAELGVP NYFGSQRFGR HGNNLSEARR
WGRDNVRSRN QNQRSLYLSA ARSWIFNQIV SKRIEQGCFA RFIEGDIALA EQQMFNVDGD
LALWDQRLQA GEVAISAALA GDNALPTSGQ ALPLEQAELD AEPDLMALIR GNRMRHDRRA
IALKAQNLSW QVQEDQITLR FSLDAGSFAT SLVRELIEEI PVVRHYDQGH EQESRDSESE
D
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