| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0014 |
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| Symbol | pilT-1 |
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| ID | 5137893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 9423 |
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| End bp | 10460 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640531474 |
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| Product | twitching motility protein PilT |
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| Protein accession | YP_001215988 |
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| Protein GI | 147674559 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCG CTGAGTTACT GGAATTTAGT GTAAAACATA ACGCCTCAGA TCTACATCTT
TCCGCAGGTG TTCCGCCTAT GGTACGGATT GATGGCGAAG TTAGGAAGCT TGGCGTGCCT
GCTTTTACCC ATTCTGATGT ACATCGCTTG ATTTTTGAGA TCATGAATGA TGCCCAGCGC
AGTGAATATG AAGAGAAATT AGAAGTCGAT TTTTCTTTTG AACTGCCTAA TGTTGGCCGT
TTCCGGGTTA ACGCGTTTCA TCAAGCGCGC GGATGCTCGG CGGTGTTTCG TACCATTCCC
ACTGTCATCC CGACGCTAGA GCAACTGGAT GCTCCTGAAA TCTTCAGCAA AATTGCCAAT
TATGAAAAAG GGTTAGTTTT AGTGACTGGG CCAACGGGCT CGGGTAAGTC GACGACCTTG
GCGGCGATGG TGAACTATGT CAATGCTCAT CACAATAAGC ATATTTTGAC CATTGAAGAT
CCGATTGAAT TTGTGCACAG CAACAATAAG TGTTTGATCA ACCAACGCGA AGTGCACCGT
GATACCCACA GTTTTAAAAA TGCATTGCGC TCGGCATTGC GTGAAGACCC AGATGTGATC
CTCGTCGGTG AGCTGCGTGA CCAAGAAACC ATTAGCTTGG CGCTTACTGC GGCAGAAACC
GGTCACTTGG TGTTTGGCAC TCTACACACC AGCTCGGCGG CGAAAACTAT TGACCGGATT
ATCGATGTTT TTCCGGGCAG CGACAAAGAC ATGGTGCGTT CCATGCTGTC GGAATCGCTG
CGTGCGGTTA TTGCGCAAAA ACTCCTAAAA CGCGTCGGGG GTGGCCGTGT CGCGTGTCAT
GAAATCATGC TGGCAACGCC AGCGATCCGG AACTTGATCC GTGAAGATAA AGTGGCGCAG
ATGTATTCGA TCATCCAAAC CGGTGCCGCA CACGGCATGC AAACCATGGA GCAAAACGCC
AAACAGCTGA TCGCTCGTGG TGTGGTGGAT GCGCAAGAAG TACAGAGCAA AATCGAGTTG
GATTTAAAAG CATTTTAG
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| Protein sequence | MDIAELLEFS VKHNASDLHL SAGVPPMVRI DGEVRKLGVP AFTHSDVHRL IFEIMNDAQR
SEYEEKLEVD FSFELPNVGR FRVNAFHQAR GCSAVFRTIP TVIPTLEQLD APEIFSKIAN
YEKGLVLVTG PTGSGKSTTL AAMVNYVNAH HNKHILTIED PIEFVHSNNK CLINQREVHR
DTHSFKNALR SALREDPDVI LVGELRDQET ISLALTAAET GHLVFGTLHT SSAAKTIDRI
IDVFPGSDKD MVRSMLSESL RAVIAQKLLK RVGGGRVACH EIMLATPAIR NLIREDKVAQ
MYSIIQTGAA HGMQTMEQNA KQLIARGVVD AQEVQSKIEL DLKAF
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