| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0012 |
|---|
| Symbol | proC |
|---|
| ID | 5136979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 7816 |
|---|
| End bp | 8634 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640531472 |
|---|
| Product | pyrroline-5-carboxylate reductase |
|---|
| Protein accession | YP_001215986 |
|---|
| Protein GI | 147673294 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
|---|
| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGA GAAGCATCGC CTTTATTGGC GCAGGTAACA TGGCACGCGC CATCATTGCG
GGATTGATTG CCAGTGGTTA CGCCGCCGAT AAGATCATCG CAACCGCCCC TTCACTCACG
CGCCGCGAGC CTCTTGAAGC GCAATACGGT ATTCGCACCA CCAGCGATAA CCAGCAAGCG
GCGCAACAAG CGGATGTGGT GGTGTTAGCG GTCAAACCGC AGCTGATGGC TGAGGTGTGT
AAACCGCTGC AAGCGGTCGA TTTCTCTGGA AAGTTAGTTA TCTCGATTGC GGCGGGTGTG
TCAGTCAAAA GACTCAATGA GATGCTGGCC ACCCAGCTCA ATTTAGTGCG TGTGATGCCC
AATACGCCAT CACTGGTAAA CCTTGGCATG AGCGGTTTGT ACGCCCCTGA TTCGGTAAGC
GAAGCGGATA AAGCCTTTAC CACACAACTG ATGCAAAGCG TGGGCGAAGT GTGCTGGGTA
GAAAACGAAT CCGGCATCAA CAGCGTGATT GCCGCCGCAG GGAGTGCTCC TGCTTATTTC
TTCTTGTTTA TGCAAGCCAT GCAGCAAGAG GCGATGGCGC AAGGCTTTGA TGAAGCCACC
GCCCGTTTAT TAGTACAACA ATCGGCTCTC GGTGCGGCCG CCATGGTCAA AGCCAACCCT
GAACTCTCAC TGACCACTTT GCGTGAACAA GTGACGTCAA AAGGCGGCAC CACGGCGCAA
GCGATCCAGA CGTTTAACGA TCACCAACTC AGCGACATCG TTGCCAAAGC GATGCAAGCG
GCGGTAACAC GCGCGCAAGA GATGGAACAA CTGTTTTAA
|
|---|
| Protein sequence | MEQRSIAFIG AGNMARAIIA GLIASGYAAD KIIATAPSLT RREPLEAQYG IRTTSDNQQA
AQQADVVVLA VKPQLMAEVC KPLQAVDFSG KLVISIAAGV SVKRLNEMLA TQLNLVRVMP
NTPSLVNLGM SGLYAPDSVS EADKAFTTQL MQSVGEVCWV ENESGINSVI AAAGSAPAYF
FLFMQAMQQE AMAQGFDEAT ARLLVQQSAL GAAAMVKANP ELSLTTLREQ VTSKGGTTAQ
AIQTFNDHQL SDIVAKAMQA AVTRAQEMEQ LF
|
|---|
| |