| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1077 |
|---|
| Symbol | |
|---|
| ID | 5135046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 1044245 |
|---|
| End bp | 1045150 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640531399 |
|---|
| Product | NAD-dependent DNA ligase |
|---|
| Protein accession | YP_001215913 |
|---|
| Protein GI | 147671827 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 59 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA GAATTGTTGA TATTGATGAA CATGGACAAC CCACTTCATG GGGCATTAAC
TATAAGCGTA ATAAAGAAAA AGCATTGAAG TCACTACAAG GCATTCTATC CGGCATTCAG
GCTGATAGAC GCCTTAATCC AACGGAAGTC CTATTTCTTG ATACTTGGTT AAAAACCGAC
ACGGCTTTTA AGAAGGATGG AGACTTTCTT GATTTGAGAG ATCTTATCGA GGATGTTCTT
GAAGATGGCG TTGTTGAAGA ACATGAGTTA ACAGAAATTA GAAACTTGAT TAAAGATATT
TTGAATTATG GCTTCAGAGA TGGTTGGGAA TCTGATGGTT TGATTAATCA ACTCCTTGGT
TTTTTGCAAG GTATTACTGC GGACGACTCC ATCAACGATA AAGAAATTCA TGCTCTTAAT
AAGATGCTTA ATTCTAACAG AGAAGTTATC GCAAATTGGC CGGGCGATGT TATTCATCAA
CGTTTAAACA AAATTCTTTC TGATGGCATC GTGGATGATG AAGAACGTCA TGAGCTTCTA
TCAATGTTGA AGTCTATCTG TGGACAACAG TTCACGGACA CTGGCTGCGC TGAATGTTTT
GCAACTGATT ACTTTTCTGA TGATGTCGTA GTTAATTCTA TTTCTGGACT ACAAGTTTGT
TTTACTGGAA AGTTTTTCGC TGGTAATCGT AAGTCTATTG AAAATAAAGC TAAAGAACTT
GGTGCAGATG TTCGTTCTGA TGTGAATAAA CAACTAGACC TACTTGTTAT TGGTTCTATG
GCCAGCCGTG ATTGGATTCA TACTAGCCAT GGTAGAAAAA TTGAATCAGT TATCAATAAT
CGCAAAAGTG GCTCATCTAC AAAAATCCTT ACCGAACAAG CATGGCTTGC TCTGATTGGT
GGCTGA
|
|---|
| Protein sequence | MTDRIVDIDE HGQPTSWGIN YKRNKEKALK SLQGILSGIQ ADRRLNPTEV LFLDTWLKTD
TAFKKDGDFL DLRDLIEDVL EDGVVEEHEL TEIRNLIKDI LNYGFRDGWE SDGLINQLLG
FLQGITADDS INDKEIHALN KMLNSNREVI ANWPGDVIHQ RLNKILSDGI VDDEERHELL
SMLKSICGQQ FTDTGCAECF ATDYFSDDVV VNSISGLQVC FTGKFFAGNR KSIENKAKEL
GADVRSDVNK QLDLLVIGSM ASRDWIHTSH GRKIESVINN RKSGSSTKIL TEQAWLALIG
G
|
|---|
| |