| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1066 |
|---|
| Symbol | |
|---|
| ID | 5134772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 1036755 |
|---|
| End bp | 1039304 |
|---|
| Gene Length | 2550 bp |
|---|
| Protein Length | 849 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640531388 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001215902 |
|---|
| Protein GI | 147672225 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAACCAA CCGAAATCGA GCTGTTCGAC TTCCCTTGGC AAGCGCCGCT GTCACCGATT
AACTATGACG TGACAGCGAT TGCCGCTGGC CATAAAGTCG CGAACGTTGA ACCCGACGAC
ATGAGCGTGA TCGAGCGCCG ACTTTACGAA GTCGATGCGC TTTCTCACGA GTGGCGCAAA
GCCTTTTTTC AAGACGTGCC GCCATACCTC GCGAAATACT TTGCTGAACG CTACATCCGC
ACTTATGAGC AAAAGGGCTC GCGAGCGGCG AATACCTTCC TGCGTGAAAA AATGCGCCCA
GCCAAAGAGC GCGTGCTCAA AGTGCTGCAA CAATACAAAC AACTGCCTAA CACACAAAAG
GTGGCTTTGC TCAGTGAAGA ATATGAAGAC ACTGATCAAA GCGACTTTTC ACCACTGCCT
GAAACCAAAC CACAAATGAA GTTTGATTTC GAAGCCGCAG AGAAAAACCG CAAACCAGTC
AAACAGCGCC TGCTTGCTGA ATTAGAGCAA GACGAACTGC GCGACATGGC ATTCCGCATT
GCCAAAATCA TGGAAGCCTA TTTGCAGCTC ACTGCTAGCC GCAAACACGC CGACAGCGAA
GAAGATGTAG ACCAAGCGGT TGTTGATGCT TACGAAGCGC TCGCCCACTT CTGCACCAAA
ACTTTTGGCA TTAAAGCGCC GCGCAAATAC AAAGCGCAAA ACCACCTTTC AGCGTCCAGC
GACATCATGC GCATGATCAG TGATTCGTGG TGGCTTGGCC GCTTAGTCAA AGTGCGCAAA
ATCATGCGTG AACACCTCGC CATCGCCATG GGTCAGGTAT CAAACAACGC CTCACCTTAT
GCGAGTTGGG ATTGTGTGCG CGAGCACCAA GAGCAGCAAC AACGCAACTA TGAAGCCATC
AAAAACATGG TGCTGTTCGA TGAAGAAACC GAAGAAGAGC ACGACCTGTG GGACATGGTC
AAAAAGAGCG TTTCTAACCC TGCGATTCGC CGCCATGAAC TGATGGTGCG CTGCCGTGGC
TGTGAAGACA TCGGCAACGA GCTGGGTTTG CAAGGCTTGT TCCTCACTCT CACCACGCCG
TCGAAGTACC ACAACAGCTA CAAAAAAGGC GGCTTTATCG ACCACTGGAA CGGAGCCAGC
CCGCGCGATG CTCAAGCCTA CTTAAACAAA AAGTGGCAGC TGATCCGCGC CAAACTGAAC
CGTGACGAAA TCCGTTGGTT TGGTGTGCGA GTTGCCGAGC CGCATCACGA TGGCACGCCA
CACTGGCATT TGCTGATTTG GGTAAGAAAG GAAGACATTT CCGCCGTGCG TGACACCTTC
ATCACCTACG CGACAGAAGA AGACCGGGGC GAACTGCACC CAGAATTCGA AAAAGAGAAA
CAAAAGCCGT TTCGCAAAGT CGTGTATGTG GGGCCGCTTG ATTACCGCCC ACGCTGTGAT
TTTGGCTACA TCGACCCAAC CAAAGGCACG GCCACTGGTT ACATCGCCAA ATACATTTCA
AAGAACATCG ACGGCTACGC GATGGATGGC GACATATCAG ACGAAACCGG AAAGCCAGTC
AAAGACATGG CACGCAACGT CAGCGCATGG AAAAGCCGCT GGAGTATTCG CCAGTTTCAA
TTCTTCGGTG GTGCGCCTGT GACCACATAC CGCGAACTGC GCCGCCTCGC GAACCAGAAT
AAAAAAGCCT TCATGGAGTA CATTTTCATG CAGGAAAGAG CCGATCTCAT CAGCATGTAT
GAGTTGCTGC ACTATCAACT CGTTGGCGCT TACAAGCCAG CGCGAGTCAT GACCAATCAA
GAACTGGTCG AAGTGATCGC CAAAAGCTAC GAAGCCCGCG CCAAAACAGA GATTCCCCAT
GTGGCCGCTG TGCTGCGCTC TGCCGATGAA GGGCGTTGGC ATGGTTACAT CATGAATCAA
GGTGGCCCCT TCGTGAAACG CAAAGAGCTA TTAGTTACCA ACGTGTATCA AGAGCTGCCG
TTTGCTTCTC CTTACGCCGA AGCCATCCGC AAGTTGGAAG GAATCGCCAC ACCCGAGCAA
GTCATTAAAA CCCGTGAAAA GGTTTGGACA ATCAAACGCA AGGGCAAGGA AACCACAGAA
GGTGAAGCGG TGGGTTTTGG GAGCGAAGCG ACTGCCTTTG GCGGCTCTGC CGCCTCTCGG
AGTTCTGTCA ATAACTGTAC GGAGCCATTT ACCGGACAGG TCAGCACTCA GCTAACCCGT
TTGTTGCAGC CGGACAGGCT AAAAGGATCA CAAAACGATC AGATTGTTGA TGAAGTCGCC
ATCAGCGCCC TGTTTAAAGG CAGCACATTG CGACTCGATG ACGAAACAGA ACTGAAAATC
CGCCCTGCGG AGGTGGATGA ACACGGAAAA ATCAGGCCAG CGCGTTTGGT TGAAGTAAAA
CGCGAGGTCG ATAGCGACAT TTGGTGCCGC TTCGAAGGCT GGGAGAAGTT CGAACAGCAA
ATGGAGAAGC TAAACCAGAA ACCACAAGAA CATTCACAAC CAGACCTATC GTTCTTCCAA
GAGTTGGAAG GCGACTGGCC ATTAGCGTAG
|
|---|
| Protein sequence | MEPTEIELFD FPWQAPLSPI NYDVTAIAAG HKVANVEPDD MSVIERRLYE VDALSHEWRK
AFFQDVPPYL AKYFAERYIR TYEQKGSRAA NTFLREKMRP AKERVLKVLQ QYKQLPNTQK
VALLSEEYED TDQSDFSPLP ETKPQMKFDF EAAEKNRKPV KQRLLAELEQ DELRDMAFRI
AKIMEAYLQL TASRKHADSE EDVDQAVVDA YEALAHFCTK TFGIKAPRKY KAQNHLSASS
DIMRMISDSW WLGRLVKVRK IMREHLAIAM GQVSNNASPY ASWDCVREHQ EQQQRNYEAI
KNMVLFDEET EEEHDLWDMV KKSVSNPAIR RHELMVRCRG CEDIGNELGL QGLFLTLTTP
SKYHNSYKKG GFIDHWNGAS PRDAQAYLNK KWQLIRAKLN RDEIRWFGVR VAEPHHDGTP
HWHLLIWVRK EDISAVRDTF ITYATEEDRG ELHPEFEKEK QKPFRKVVYV GPLDYRPRCD
FGYIDPTKGT ATGYIAKYIS KNIDGYAMDG DISDETGKPV KDMARNVSAW KSRWSIRQFQ
FFGGAPVTTY RELRRLANQN KKAFMEYIFM QERADLISMY ELLHYQLVGA YKPARVMTNQ
ELVEVIAKSY EARAKTEIPH VAAVLRSADE GRWHGYIMNQ GGPFVKRKEL LVTNVYQELP
FASPYAEAIR KLEGIATPEQ VIKTREKVWT IKRKGKETTE GEAVGFGSEA TAFGGSAASR
SSVNNCTEPF TGQVSTQLTR LLQPDRLKGS QNDQIVDEVA ISALFKGSTL RLDDETELKI
RPAEVDEHGK IRPARLVEVK REVDSDIWCR FEGWEKFEQQ MEKLNQKPQE HSQPDLSFFQ
ELEGDWPLA
|
|---|
| |