| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0963 |
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| Symbol | emrD-3 |
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| ID | 5134538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 941354 |
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| End bp | 942493 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640531285 |
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| Product | multidrug resistance protein D |
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| Protein accession | YP_001215799 |
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| Protein GI | 147672030 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0211536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGACGA AGCCTTCTCT CTGGTTGATG GTGATTATGT TGATGTTTCC ACAAATCGTC
GAAACCATCT ATAGCCCGGT GTTGGGCTCT ATTGCGCGGT CATTTTCGGT GAGTGATGCC
CAAGCCGCTC AAACCTTGTC GGTCTATTTT TTGGCTTTTG CATTGGGAGT GGTGATATGG
GGAGTACTCG CGGATAAATG GGGGCGTCGG CCTACTATGT TGGTGGGCCT ACTGATTTAC
GGGAGCGCTA CATTTATCGC AATGCAGACA GACAGTTTCA CTATCTTGAT GTTAGCACGA
GTATTCAGCG CCTTTGGTAT CGCTGTCGGT TCCGTGGTAA CGCAAACTAT TTTACGCGAT
GTGTTCAGTG GTCATGAACT GAGAAAAGTT TTTAGTTTAA TGGGGATAGG TATATCTATA
AGCCCAGTGC TAGGGATGTT GCTTGGTGGG CAGTTAGCGT TTGCAGGTGG GCATCAATTA
GTTTTTCTGG CGCTATTTTT TATAGCTCTG GTGCTGTTCG TTTATAACTT GTGTCAGCTT
CCCGAAACGC AACAGGTCAA GCCGAAGATC GCATTGGGTT GTTTAGTGGC TCGAATGTTT
AAAGATAGAC AAGTGCTGCT TTCAGCACTG CTAGTGGCGT TATACAACGT GGCCTTATTT
TCTTATTACC AGCTTGGTGC CTTTATCTTT AGCGATTTGG GGTTAGATGC GGAACAGTTT
GGCTATAGTG GTATTGCACT TGGCCTCGGT AGCTTAATCG GGAGCTTTCT TAACAAAACG
TTGCTTGCTA AACAGGTGCC ACAGCGTGCG CTGCTTTTAC TGGCAGCACT GTTATTAATC
ATGGGAACTA TAGGCGTATC TTTGACGCTT GATTCGATCG GTTTTGTGGC CGCAATGATA
TTGGTTGTGA TCGCTTATGG TATGGCGATT CCGAATATCT TGAGCACTGC ACTGGTGGAG
TATAAATCGC AAGCAGGGAG TGCTGGAGCG CTGTTTGGCC TGCTCTATTA TCTTTTGATT
GGTAGTGGTT TGGCGCTCAC GGGTTTAGTA CAACGTTTAG GTGTCGTGCT TCTGATGTGC
GCTGGTATCA CCTTGTTGGC AACCTTAGCT CGCTCTAGTC ACATAGCCCG TCTACCATGA
|
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| Protein sequence | MKTKPSLWLM VIMLMFPQIV ETIYSPVLGS IARSFSVSDA QAAQTLSVYF LAFALGVVIW
GVLADKWGRR PTMLVGLLIY GSATFIAMQT DSFTILMLAR VFSAFGIAVG SVVTQTILRD
VFSGHELRKV FSLMGIGISI SPVLGMLLGG QLAFAGGHQL VFLALFFIAL VLFVYNLCQL
PETQQVKPKI ALGCLVARMF KDRQVLLSAL LVALYNVALF SYYQLGAFIF SDLGLDAEQF
GYSGIALGLG SLIGSFLNKT LLAKQVPQRA LLLLAALLLI MGTIGVSLTL DSIGFVAAMI
LVVIAYGMAI PNILSTALVE YKSQAGSAGA LFGLLYYLLI GSGLALTGLV QRLGVVLLMC
AGITLLATLA RSSHIARLP
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