| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0955 |
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| Symbol | gcvP |
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| ID | 5134471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 930359 |
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| End bp | 933223 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640531277 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_001215791 |
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| Protein GI | 147671551 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.800544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGAAT TACTTCACAG CCTAAGCACA CAAAATGAGT TCGTTGCACG CCACAACGGG
CCAGATAAAC AAGAACAAGC CACCATGCTT AAAACGGTGA ATGCGGAAAG TTTGGATGCG
CTGATCGCCC AAACCGTGCC TGCCCAAATC CGTTTAGAAG CGCCAATGCA GCTCGCGCCC
GCTCAAAGCG AAGCTGATAT GCTGGCAACG ATGAAATCGT TCGCCAAACT TAACCAGCTT
AAACGGACTT TCATCGGTCA GGGTTACTAC AACACCTTCA CACCGAACGT CATTTTACGT
AACGTGATGG AAAACCCGGG CTGGTACACC GCTTACACTC CTTATCAGCC AGAAATCTCG
CAAGGCCGTC TTGAATCGCT GCTTAACTAT CAGCAGATGG TGATGGATTT AACCGCGATG
GAGATTGCGA ACGCGTCACT GCTGGATGAA GCGACAGCGG CGGCCGAAGC GATGGCACTG
TGTCAACGCG CAGGCAAGAG CAAAAGCAAC CTGTTCTTTG TTGCCGATGA CGTGCATCCA
CAAACCATTG AAGTGGTGAA AACTCGCGCC GCATTCCTTG GCTTTGAGGT AAAAGTCGAT
TCGATTGACA ACATCACCCA ACAAGAAGCT TTTGGCGCAC TGCTGCAATA CCCGGGTACA
ACCGGTGAAG TGCGCGATCT GACTGACATC ATCGCCAAAG CACAAGCCAA CAAAACCTTA
GTCACCGTAG CGACCGATTT ACTCGCCAGC GTGCTGCTCA AACCTGCGGG TGAAATGGGC
GCAGATGTCG TAATTGGTTC TGCTCAGCGC TTTGGTGTAC CTATGGGTTA TGGCGGCCCA
CACGCGGCTT TCATGGCAAC ACGTGATGCG CACAAACGCA CCATGCCGGG ACGTGTGATC
GGTGTTTCGA TTGATGCGAA AGGTAACCAA GCCTTACGTA TGGCAATGCA AACCCGTGAG
CAGCACATTC GCCGTGAAAA AGCGACCTCC AACATCTGTA CCGCGCAAGC GCTGCTGGCC
AACATGGCTG CGTTTTATGC GGTGTACCAT GGTCCACAAG GTCTGCGCAC TATTGCGCGC
CGCGCTCACC ACCTCACCGC GATTCTTGCT GCTGGCTTAA CCAAAGCGGG TTACGAACTG
GCGCATCAGC ATTTCTTTGA TACGCTGGCG ATCAATACAG GTGCAAAAAC CGATGCTCTG
TACCAAGCTG CGCAACAAGC GAACATCAAT CTGCGTAAAC TGCCTAATCA GCTTGGCGTG
AGCTTTGATG AAACCACGAC AGTGGCTGAC GTTGAAGCGC TCTTTGCGAT CTTTGGTATT
AAAGAAGAGG TTCATGCACT TTCCGACCGC ATTGCGACCA ATGAGCTCGC CGCGATTCCA
GAAAGTTGCC GTCGTCAAAG CGCGTTTTTG ACTCACCCTG TGTTTAACAC ACACCACAGT
GAAACTCAGA TGCTGCGTTA TATGAAGCAT CTGGAAAACA AAGATTTCTC TCTTACTCAC
GGCATGATCC CGCTAGGCAG TTGCACCATG AAGCTCAACG CTACCGCGGA GATGATTCCC
GTCACTTGGC CTGAGTTTGG CGCACTGCAT CCGTTTGTAC CAAAAGCACA AGCTGCGGGC
TATGCGGCAT TGGCTGAAGA CCTGAAGCAA AAACTGTGTG AAATCACGGG GTATGATGCT
TTCTCACTGC AACCCAACTC AGGGGCTTCC GGTGAATATG CAGGTTTAGT GGCGATTCAG
CGTTATCACC AAAGCCGCGG CGAAGGCCAC CGCAATGTTT GCCTCATCCC AAGCTCAGCA
CACGGCACCA ACCCAGCTAC CGCGGCAATG GTGTCGATGA AAGTCGTGGT GGTGAAATGC
GATGAAAACG GCAACATTGA TATGGTTGAC CTTGCGGACA AAATTGAAAA GCACAAAGAC
CATCTTTCCA GCATCATGAT CACCTACCCT TCAACGCATG GCGTGTATGA ACAGCAAGTG
CGTGAAGTGT GTGAAATGGT GCATGCAGCA GGTGGTCAAG TTTACCTTGA TGGTGCAAAC
ATGAACGCGC AAGTGGGGCT GACCTCACCG GGCTTTATCG GCTCAGACGT ATCACACCTG
AACTTGCACA AAACCTTCTG TATTCCACAC GGCGGCGGCG GCCCAGGCAT GGGACCTATC
GGTGTGAAAT CGCACCTAGC ACCTTTCCTG CCAGGACACA TTGAAGGTGG CGTAGAGGGT
TCTGATTTCG CGGTTTCCGC AGCCGATCTT GGCAGCGCGT CCATTCTGCC GATCTCTTGG
GCCTACATTG CGATGATGGG TGCAGACGGT CTGGCTGAAG CCACCAAGCT GGCGATTTTG
AATGCCAACT ATGTGATGGA GCGTCTGCGT CCGCACTACC CGATCCTTTA CCGTGGTGCA
AATGGTCGAG TGGCGCACGA GTGCATCATC GATATCCGTC CTCTGAAAGA AGAAACTGGG
ATTAGCGAAG AAGATATTGC CAAACGCTTG ATGGACTACG GCTTCCACGC GCCAACTATG
TCATTCCCAG TAGCAGGCAC TTTAATGGTT GAGCCAACGG AATCGGAAGA TTTGGCGGAG
CTGGATCGCT TCTGTGATGC ATTGATTGCG ATTCGTGGCG AGATCGACAA AGTGAAAAAT
GGCGAATGGC CGCTTGAAAG CAACCCTCTG GTGCATGCGC CGCATACCCA AGCGGATCTG
CGCGAAGAGA AATGGGATCG TCCATACTCA CGTGAAATCG CCTGCTTCCC ATCGGCACAC
ACCAAAGCCA GCAAATACTG GCCAACGGTG AACCGTGTCG ATAACGTTTA CGGCGACCGT
AACCTCGTCT GTTCATGCCC AAGCATTGAC AGTTATCAGG ACTAA
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| Protein sequence | MTELLHSLST QNEFVARHNG PDKQEQATML KTVNAESLDA LIAQTVPAQI RLEAPMQLAP
AQSEADMLAT MKSFAKLNQL KRTFIGQGYY NTFTPNVILR NVMENPGWYT AYTPYQPEIS
QGRLESLLNY QQMVMDLTAM EIANASLLDE ATAAAEAMAL CQRAGKSKSN LFFVADDVHP
QTIEVVKTRA AFLGFEVKVD SIDNITQQEA FGALLQYPGT TGEVRDLTDI IAKAQANKTL
VTVATDLLAS VLLKPAGEMG ADVVIGSAQR FGVPMGYGGP HAAFMATRDA HKRTMPGRVI
GVSIDAKGNQ ALRMAMQTRE QHIRREKATS NICTAQALLA NMAAFYAVYH GPQGLRTIAR
RAHHLTAILA AGLTKAGYEL AHQHFFDTLA INTGAKTDAL YQAAQQANIN LRKLPNQLGV
SFDETTTVAD VEALFAIFGI KEEVHALSDR IATNELAAIP ESCRRQSAFL THPVFNTHHS
ETQMLRYMKH LENKDFSLTH GMIPLGSCTM KLNATAEMIP VTWPEFGALH PFVPKAQAAG
YAALAEDLKQ KLCEITGYDA FSLQPNSGAS GEYAGLVAIQ RYHQSRGEGH RNVCLIPSSA
HGTNPATAAM VSMKVVVVKC DENGNIDMVD LADKIEKHKD HLSSIMITYP STHGVYEQQV
REVCEMVHAA GGQVYLDGAN MNAQVGLTSP GFIGSDVSHL NLHKTFCIPH GGGGPGMGPI
GVKSHLAPFL PGHIEGGVEG SDFAVSAADL GSASILPISW AYIAMMGADG LAEATKLAIL
NANYVMERLR PHYPILYRGA NGRVAHECII DIRPLKEETG ISEEDIAKRL MDYGFHAPTM
SFPVAGTLMV EPTESEDLAE LDRFCDALIA IRGEIDKVKN GEWPLESNPL VHAPHTQADL
REEKWDRPYS REIACFPSAH TKASKYWPTV NRVDNVYGDR NLVCSCPSID SYQD
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