Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0636 |
Symbol | |
ID | 5134569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 695619 |
End bp | 697547 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640530958 |
Product | sensory box/GGDEF family protein |
Protein accession | YP_001215475 |
Protein GI | 147671427 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATTCGTT CTATAGTATG CACTCAACGA CTTATACATC GAATTATGTA CACCTCTGCC CGTAAATATT TCATACAATT TGCCATTGTT GCGTTTGTAC TTGGTTTCAT TCCTACACTG TATTTCATAC ATGCTGCTAG CCAGCTTGAG ACTCAAGCGG TCAGCAGCGT TGAAAAACAG ACTCGCTTAC AACTTGAGTT CAGTCAGCAT GACTTGTTAC GAATGCTGGA AAGCACACAC CAAGCCACCC AGCTGTTAGC TAAAAATGAC CTTTTATTCA CGGCTGTCAC CACACCAAGT AAAGAAGCAC TCAGTCAACT CAAAACATTG TGGGATGTGA CGTTAAGATC GCAAGCGATT TTCTCTTCAT TCAGATTGCT GGATAGACAA GGAAAAGAAC AACTTAAAGC GATTTACGAT GGGCACCAAG TCACCTTTGT TGAATCTGCT CAAACGACAG ATCCGTTCAG CCAGCAAATT GTGGCTCAAT ACGCCCAACT CACGACGCCT CAAGTTTGGG CAACGCAAGT CGCGATGTCA GCAGATACGC CTTCTGGTAT GCTGCCGACC TTTCGTTTTG TGACGGGTAT TGAGCATCAA GGCCAACGGC AAGGTTTTCT TGTCGTGACG GTGAAGCTAC AGTCTCTCTA TCAACGTCTC TCTTTTATTT ATGATCAGTT TGATTCACCG GATATTTTGA ATTCGGCAGG AGAATTACTG CTCAGTGAAC ACAAGCCATC CGGTACACGT TCAACCTCTT CACTCCACTT TTCAGCCCAA CACCCAGAGC TTTGGCAAAA AATCCAACTC AACCAACAAG GCTTTGCTCT ATCCAATCAA ACCTGGTTTA GCTATATCAA AGTGGATCTC AGTTCTGTCT TACCTGACTT TAAACCTTTG GTATTGGTAC TGCGCATCAA TAAGGCAGAA ATAGATAAGA CCTACGCAAA TGCGCGCTGG GCACTGATGA GTCAAGCGGT GACAGTGTTA TCGCTACTCT CTATCATTGC GGCTGGATTT GCGGCATGGA ACATCAACCA TTTAAAAAAT AGCCTTGACA GTAAATTGGC TCGAACAGCG ATGGATGGCA TGTCAGCGGT GGTCATTACC GACCGCCAGA ATCGCATCAT CAAAGTAAAC AACGAATTTA CCCGCCTAAG TGGTTACACT TTTGAAGATG TCAAAGGTAA GCAGCCGTCC ATTTTTGCTT CTGGATTACA CAAAGTCGAA TTCTATATGC AGATGTGGAA AGCTCTGCAA GACAATGGCG TATGGGAAGG TGAAGTGATC AACAAACGCA AAGATGGCGA AAGCATCACC GAAATTCTCC GTATTCAAAG CATCCGCGAT GAAGACAATG TCATTCAATT CTACGTTGCC TCTTTTGTGG ATATTTCACA TCGCAAGGCG CTGGAGAATC GCCTGCGTGA GCTGAGCGAA AAAGATGCGT TAACCGATTT GTGGAATCGA CGTAAATTCG ATCAAACCAT CTCTTTAGAG TGCGCTAAGC GTCGCCGTTA TCCCGATCAA GCCCAGAGCT GCCTTGCTAT CATTGATATC GACCACTTTA AACGCATTAA CGACAAATTC GGACACAACG AAGGGGACCT AGTGTTACGG ACCGTTGCGA AAGGCATCCA AGATCAGTTA CGGGAATCGG ATTTTATCGC ACGGATTGGC GGAGAAGAGT TTGCCATTAT TTTCCCCTAC ACTTCCATTG AAGAAGCCGA ACAAGTACTT AACCGCGTAC GCCTGCATAT CGCTTCATTA CACCATCAAC AAGTGACCCT AAGTGGTGGT GTTACCGATG TTTGCACATC ACCCGACCAA AGCTACAAAA GAGCCGATCT GGCTTTATAT GAATCCAAAA CATCGGGACG CAACCAAATA TCAGTACTCA CCGCCATGGA AATGCATCAC TTTGCGTGA
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Protein sequence | MIRSIVCTQR LIHRIMYTSA RKYFIQFAIV AFVLGFIPTL YFIHAASQLE TQAVSSVEKQ TRLQLEFSQH DLLRMLESTH QATQLLAKND LLFTAVTTPS KEALSQLKTL WDVTLRSQAI FSSFRLLDRQ GKEQLKAIYD GHQVTFVESA QTTDPFSQQI VAQYAQLTTP QVWATQVAMS ADTPSGMLPT FRFVTGIEHQ GQRQGFLVVT VKLQSLYQRL SFIYDQFDSP DILNSAGELL LSEHKPSGTR STSSLHFSAQ HPELWQKIQL NQQGFALSNQ TWFSYIKVDL SSVLPDFKPL VLVLRINKAE IDKTYANARW ALMSQAVTVL SLLSIIAAGF AAWNINHLKN SLDSKLARTA MDGMSAVVIT DRQNRIIKVN NEFTRLSGYT FEDVKGKQPS IFASGLHKVE FYMQMWKALQ DNGVWEGEVI NKRKDGESIT EILRIQSIRD EDNVIQFYVA SFVDISHRKA LENRLRELSE KDALTDLWNR RKFDQTISLE CAKRRRYPDQ AQSCLAIIDI DHFKRINDKF GHNEGDLVLR TVAKGIQDQL RESDFIARIG GEEFAIIFPY TSIEEAEQVL NRVRLHIASL HHQQVTLSGG VTDVCTSPDQ SYKRADLALY ESKTSGRNQI SVLTAMEMHH FA
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